Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4339 and GFF4340 are separated by 3 nucleotides GFF4340 and GFF4341 overlap by 1 nucleotides GFF4341 and GFF4342 are separated by 12 nucleotides
GFF4339 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin), at 55,423 to 56,532
GFF4339
GFF4340 - Cytoskeleton protein RodZ, at 56,536 to 57,549
GFF4340
GFF4341 - hypothetical protein, at 57,549 to 58,307
GFF4341
GFF4342 - Dual-specificity RNA methyltransferase RlmN, at 58,320 to 59,468
GFF4342
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.607 kb on - strand at 56.686 kb on - strand, within GFF4340 at 56.686 kb on - strand, within GFF4340 at 56.686 kb on - strand, within GFF4340 at 57.188 kb on - strand, within GFF4340 at 57.188 kb on - strand, within GFF4340 at 57.244 kb on - strand, within GFF4340 at 57.357 kb on - strand, within GFF4340 at 57.566 kb on - strand at 57.566 kb on - strand at 57.566 kb on - strand at 57.566 kb on - strand at 57.566 kb on - strand at 57.566 kb on - strand at 57.593 kb on - strand at 57.617 kb on - strand at 57.673 kb on - strand, within GFF4341 at 57.673 kb on - strand, within GFF4341 at 57.678 kb on - strand, within GFF4341 at 57.678 kb on - strand, within GFF4341 at 57.678 kb on - strand, within GFF4341 at 57.715 kb on + strand, within GFF4341 at 57.716 kb on - strand, within GFF4341 at 57.716 kb on - strand, within GFF4341 at 57.719 kb on - strand, within GFF4341 at 57.737 kb on - strand, within GFF4341 at 57.737 kb on - strand, within GFF4341 at 57.737 kb on - strand, within GFF4341 at 57.737 kb on - strand, within GFF4341 at 57.737 kb on - strand, within GFF4341 at 57.737 kb on - strand, within GFF4341 at 57.737 kb on - strand, within GFF4341 at 57.737 kb on - strand, within GFF4341 at 57.737 kb on - strand, within GFF4341 at 57.898 kb on + strand, within GFF4341 at 57.899 kb on - strand, within GFF4341 at 57.935 kb on - strand, within GFF4341 at 57.946 kb on + strand, within GFF4341 at 57.977 kb on - strand, within GFF4341 at 58.169 kb on - strand, within GFF4341 at 58.189 kb on + strand, within GFF4341 at 58.189 kb on + strand, within GFF4341 at 58.190 kb on - strand, within GFF4341 at 58.238 kb on - strand at 58.307 kb on + strand at 58.307 kb on + strand at 58.307 kb on + strand at 58.308 kb on - strand at 58.308 kb on - strand at 58.308 kb on - strand at 58.308 kb on - strand at 58.308 kb on - strand at 58.308 kb on - strand at 58.321 kb on + strand at 58.321 kb on + strand at 58.321 kb on + strand at 58.321 kb on + strand at 58.322 kb on - strand at 58.322 kb on - strand at 58.325 kb on + strand at 58.326 kb on - strand at 58.384 kb on + strand at 58.384 kb on + strand at 58.385 kb on - strand at 58.385 kb on - strand at 58.385 kb on - strand at 58.385 kb on - strand at 58.385 kb on - strand at 58.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 56,607 - +1.1 56,686 - GFF4340 0.15 +0.5 56,686 - GFF4340 0.15 -1.3 56,686 - GFF4340 0.15 -0.2 57,188 - GFF4340 0.64 +1.2 57,188 - GFF4340 0.64 +0.3 57,244 - GFF4340 0.70 +2.3 57,357 - GFF4340 0.81 +0.3 57,566 - +0.2 57,566 - -0.6 57,566 - +0.1 57,566 - +0.0 57,566 - -0.3 57,566 - +0.3 57,593 - -0.0 57,617 - +0.7 57,673 - GFF4341 0.16 +0.6 57,673 - GFF4341 0.16 +0.2 57,678 - GFF4341 0.17 +1.0 57,678 - GFF4341 0.17 +0.4 57,678 - GFF4341 0.17 -0.1 57,715 + GFF4341 0.22 -0.5 57,716 - GFF4341 0.22 +0.4 57,716 - GFF4341 0.22 +0.1 57,719 - GFF4341 0.22 -0.5 57,737 - GFF4341 0.25 -0.3 57,737 - GFF4341 0.25 -0.1 57,737 - GFF4341 0.25 -0.0 57,737 - GFF4341 0.25 -0.2 57,737 - GFF4341 0.25 +0.2 57,737 - GFF4341 0.25 -0.3 57,737 - GFF4341 0.25 +1.5 57,737 - GFF4341 0.25 +0.7 57,737 - GFF4341 0.25 -0.2 57,898 + GFF4341 0.46 -0.5 57,899 - GFF4341 0.46 +0.1 57,935 - GFF4341 0.51 -0.6 57,946 + GFF4341 0.52 -0.2 57,977 - GFF4341 0.56 +1.1 58,169 - GFF4341 0.82 +1.1 58,189 + GFF4341 0.84 -0.3 58,189 + GFF4341 0.84 +0.5 58,190 - GFF4341 0.84 +1.5 58,238 - -1.3 58,307 + +0.3 58,307 + +1.3 58,307 + -1.9 58,308 - +0.0 58,308 - -2.0 58,308 - -0.5 58,308 - +0.9 58,308 - -0.5 58,308 - +0.5 58,321 + +1.0 58,321 + +1.2 58,321 + -0.9 58,321 + +1.0 58,322 - +0.4 58,322 - -0.7 58,325 + +0.0 58,326 - +0.6 58,384 + +0.9 58,384 + +1.2 58,385 - -1.5 58,385 - +0.3 58,385 - -0.4 58,385 - +0.9 58,385 - -0.3 58,385 - +0.5
Or see this region's nucleotide sequence