Strain Fitness in Pseudomonas sp. DMC3 around GFF4286

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4284 and GFF4285 are separated by 149 nucleotidesGFF4285 and GFF4286 are separated by 220 nucleotidesGFF4286 and GFF4287 are separated by 14 nucleotidesGFF4287 and GFF4288 are separated by 196 nucleotides GFF4284 - hypothetical protein, at 265,507 to 282,045 GFF4284 GFF4285 - hypothetical protein, at 282,195 to 282,533 GFF4285 GFF4286 - hypothetical protein, at 282,754 to 284,706 GFF4286 GFF4287 - hypothetical protein, at 284,721 to 285,413 GFF4287 GFF4288 - hypothetical protein, at 285,610 to 286,320 GFF4288 Position (kb) 282 283 284 285Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 282.132 kb on + strandat 282.201 kb on + strandat 282.201 kb on + strandat 282.202 kb on - strandat 282.202 kb on - strandat 282.252 kb on + strand, within GFF4285at 282.253 kb on - strand, within GFF4285at 282.306 kb on + strand, within GFF4285at 282.307 kb on - strand, within GFF4285at 282.307 kb on - strand, within GFF4285at 282.685 kb on + strandat 282.806 kb on + strandat 282.806 kb on + strandat 282.806 kb on + strandat 282.806 kb on + strandat 282.806 kb on + strandat 282.807 kb on - strandat 282.807 kb on - strandat 282.950 kb on + strand, within GFF4286at 282.950 kb on + strand, within GFF4286at 282.950 kb on + strand, within GFF4286at 282.951 kb on - strand, within GFF4286at 282.971 kb on + strand, within GFF4286at 282.972 kb on - strand, within GFF4286at 283.373 kb on + strand, within GFF4286at 283.373 kb on + strand, within GFF4286at 283.373 kb on + strand, within GFF4286at 283.373 kb on + strand, within GFF4286at 283.373 kb on + strand, within GFF4286at 283.373 kb on + strand, within GFF4286at 283.374 kb on - strand, within GFF4286at 283.374 kb on - strand, within GFF4286at 283.421 kb on + strand, within GFF4286at 283.422 kb on - strand, within GFF4286at 283.422 kb on - strand, within GFF4286at 283.422 kb on - strand, within GFF4286at 283.702 kb on + strand, within GFF4286at 283.702 kb on + strand, within GFF4286at 283.702 kb on + strand, within GFF4286at 283.703 kb on - strand, within GFF4286at 283.703 kb on - strand, within GFF4286at 283.703 kb on - strand, within GFF4286at 283.788 kb on - strand, within GFF4286at 283.788 kb on - strand, within GFF4286at 283.842 kb on + strand, within GFF4286at 283.904 kb on + strand, within GFF4286at 283.962 kb on - strand, within GFF4286at 283.962 kb on - strand, within GFF4286at 283.998 kb on - strand, within GFF4286at 284.171 kb on + strand, within GFF4286at 284.172 kb on - strand, within GFF4286at 284.172 kb on - strand, within GFF4286at 284.172 kb on - strand, within GFF4286at 284.172 kb on - strand, within GFF4286at 284.203 kb on + strand, within GFF4286at 284.204 kb on - strand, within GFF4286at 284.204 kb on - strand, within GFF4286at 284.204 kb on - strand, within GFF4286at 284.204 kb on - strand, within GFF4286at 284.484 kb on - strand, within GFF4286at 284.606 kb on + strandat 284.607 kb on - strandat 284.676 kb on + strandat 284.676 kb on + strandat 284.722 kb on + strandat 284.722 kb on + strandat 284.722 kb on + strandat 284.723 kb on - strandat 284.723 kb on - strandat 284.723 kb on - strandat 284.723 kb on - strandat 284.726 kb on + strandat 284.726 kb on + strandat 284.726 kb on + strandat 284.726 kb on + strandat 284.727 kb on - strandat 284.813 kb on + strand, within GFF4287at 284.836 kb on + strand, within GFF4287at 284.836 kb on + strand, within GFF4287at 284.836 kb on + strand, within GFF4287at 284.837 kb on - strand, within GFF4287at 284.861 kb on - strand, within GFF4287at 284.950 kb on + strand, within GFF4287at 284.950 kb on + strand, within GFF4287at 284.950 kb on + strand, within GFF4287at 284.950 kb on + strand, within GFF4287at 284.950 kb on + strand, within GFF4287at 284.951 kb on - strand, within GFF4287at 284.951 kb on - strand, within GFF4287at 284.951 kb on - strand, within GFF4287at 284.953 kb on + strand, within GFF4287at 284.953 kb on + strand, within GFF4287at 284.954 kb on - strand, within GFF4287at 284.954 kb on - strand, within GFF4287at 284.999 kb on - strand, within GFF4287at 285.049 kb on + strand, within GFF4287at 285.049 kb on + strand, within GFF4287at 285.049 kb on + strand, within GFF4287at 285.050 kb on - strand, within GFF4287at 285.050 kb on - strand, within GFF4287at 285.064 kb on + strand, within GFF4287at 285.119 kb on - strand, within GFF4287at 285.155 kb on - strand, within GFF4287at 285.155 kb on - strand, within GFF4287at 285.406 kb on - strandat 285.533 kb on + strandat 285.533 kb on + strandat 285.552 kb on + strandat 285.553 kb on - strandat 285.564 kb on + strandat 285.564 kb on + strandat 285.564 kb on + strandat 285.565 kb on - strandat 285.565 kb on - strandat 285.565 kb on - strandat 285.565 kb on - strandat 285.565 kb on - strandat 285.565 kb on - strandat 285.565 kb on - strandat 285.584 kb on + strandat 285.594 kb on + strandat 285.595 kb on - strandat 285.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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282,132 + -0.1
282,201 + -1.3
282,201 + -0.5
282,202 - +0.1
282,202 - -2.2
282,252 + GFF4285 0.17 -0.2
282,253 - GFF4285 0.17 +0.2
282,306 + GFF4285 0.33 -1.5
282,307 - GFF4285 0.33 -0.5
282,307 - GFF4285 0.33 -1.4
282,685 + +0.9
282,806 + +0.6
282,806 + -0.4
282,806 + +0.2
282,806 + -0.1
282,806 + +0.4
282,807 - +0.4
282,807 - -0.7
282,950 + GFF4286 0.10 -0.0
282,950 + GFF4286 0.10 -0.7
282,950 + GFF4286 0.10 +2.6
282,951 - GFF4286 0.10 -0.0
282,971 + GFF4286 0.11 +0.1
282,972 - GFF4286 0.11 -0.9
283,373 + GFF4286 0.32 +0.3
283,373 + GFF4286 0.32 -0.2
283,373 + GFF4286 0.32 +0.5
283,373 + GFF4286 0.32 +0.7
283,373 + GFF4286 0.32 -1.3
283,373 + GFF4286 0.32 +0.5
283,374 - GFF4286 0.32 +1.1
283,374 - GFF4286 0.32 +1.7
283,421 + GFF4286 0.34 +1.1
283,422 - GFF4286 0.34 +0.2
283,422 - GFF4286 0.34 -0.7
283,422 - GFF4286 0.34 +1.1
283,702 + GFF4286 0.49 -1.3
283,702 + GFF4286 0.49 -0.1
283,702 + GFF4286 0.49 +0.7
283,703 - GFF4286 0.49 +0.6
283,703 - GFF4286 0.49 +0.6
283,703 - GFF4286 0.49 +0.2
283,788 - GFF4286 0.53 +0.4
283,788 - GFF4286 0.53 +0.4
283,842 + GFF4286 0.56 +1.5
283,904 + GFF4286 0.59 -0.5
283,962 - GFF4286 0.62 -0.7
283,962 - GFF4286 0.62 +1.1
283,998 - GFF4286 0.64 +0.2
284,171 + GFF4286 0.73 +0.6
284,172 - GFF4286 0.73 +0.1
284,172 - GFF4286 0.73 -0.5
284,172 - GFF4286 0.73 -0.2
284,172 - GFF4286 0.73 +0.7
284,203 + GFF4286 0.74 -0.5
284,204 - GFF4286 0.74 +1.2
284,204 - GFF4286 0.74 -0.6
284,204 - GFF4286 0.74 +1.2
284,204 - GFF4286 0.74 +0.4
284,484 - GFF4286 0.89 +0.6
284,606 + -0.0
284,607 - +0.7
284,676 + -0.2
284,676 + -0.1
284,722 + -0.2
284,722 + -0.0
284,722 + -0.4
284,723 - -0.6
284,723 - -1.2
284,723 - -1.0
284,723 - +1.4
284,726 + -1.1
284,726 + +0.2
284,726 + +1.5
284,726 + +0.2
284,727 - +1.1
284,813 + GFF4287 0.13 -1.3
284,836 + GFF4287 0.17 -1.6
284,836 + GFF4287 0.17 -3.1
284,836 + GFF4287 0.17 -2.4
284,837 - GFF4287 0.17 -2.2
284,861 - GFF4287 0.20 -1.8
284,950 + GFF4287 0.33 -2.1
284,950 + GFF4287 0.33 -1.8
284,950 + GFF4287 0.33 -0.2
284,950 + GFF4287 0.33 -1.2
284,950 + GFF4287 0.33 -0.3
284,951 - GFF4287 0.33 -1.2
284,951 - GFF4287 0.33 -0.4
284,951 - GFF4287 0.33 -2.6
284,953 + GFF4287 0.33 -1.0
284,953 + GFF4287 0.33 -1.5
284,954 - GFF4287 0.34 -2.7
284,954 - GFF4287 0.34 -3.2
284,999 - GFF4287 0.40 -1.6
285,049 + GFF4287 0.47 +0.6
285,049 + GFF4287 0.47 -2.1
285,049 + GFF4287 0.47 -0.2
285,050 - GFF4287 0.47 -0.7
285,050 - GFF4287 0.47 -0.3
285,064 + GFF4287 0.49 -1.9
285,119 - GFF4287 0.57 -1.9
285,155 - GFF4287 0.63 -1.5
285,155 - GFF4287 0.63 -2.0
285,406 - +0.5
285,533 + -0.6
285,533 + -0.3
285,552 + -0.8
285,553 - +0.7
285,564 + -0.1
285,564 + +0.8
285,564 + +1.4
285,565 - -0.2
285,565 - +0.2
285,565 - +0.2
285,565 - +0.6
285,565 - -0.6
285,565 - -0.8
285,565 - +0.1
285,584 + -0.6
285,594 + +0.7
285,595 - +0.8
285,595 - -0.0

Or see this region's nucleotide sequence