Strain Fitness in Pseudomonas sp. DMC3 around GFF4281

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4280 and GFF4281 are separated by 333 nucleotidesGFF4281 and GFF4282 overlap by 11 nucleotides GFF4280 - Alpha-ketoglutarate-dependent taurine dioxygenase, at 259,017 to 259,913 GFF4280 GFF4281 - Type I secretion system membrane fusion protein PrsE, at 260,247 to 261,614 GFF4281 GFF4282 - Leukotoxin export ATP-binding protein LtxB, at 261,604 to 263,760 GFF4282 Position (kb) 260 261 262Strain fitness (log2 ratio) -3 -2 -1 0 1at 259.388 kb on + strand, within GFF4280at 259.390 kb on + strand, within GFF4280at 259.390 kb on + strand, within GFF4280at 259.391 kb on - strand, within GFF4280at 259.391 kb on - strand, within GFF4280at 259.391 kb on - strand, within GFF4280at 259.391 kb on - strand, within GFF4280at 259.391 kb on - strand, within GFF4280at 259.391 kb on - strand, within GFF4280at 259.541 kb on + strand, within GFF4280at 259.543 kb on + strand, within GFF4280at 259.543 kb on + strand, within GFF4280at 259.544 kb on - strand, within GFF4280at 259.544 kb on - strand, within GFF4280at 259.544 kb on - strand, within GFF4280at 259.702 kb on - strand, within GFF4280at 259.901 kb on + strandat 259.901 kb on + strandat 260.021 kb on + strandat 260.022 kb on - strandat 260.135 kb on + strandat 260.136 kb on - strandat 260.136 kb on - strandat 260.136 kb on - strandat 260.139 kb on + strandat 260.139 kb on + strandat 260.139 kb on + strandat 260.139 kb on + strandat 260.140 kb on - strandat 260.299 kb on + strandat 260.300 kb on - strandat 260.300 kb on - strandat 260.331 kb on - strandat 260.419 kb on + strand, within GFF4281at 260.419 kb on + strand, within GFF4281at 260.419 kb on + strand, within GFF4281at 260.419 kb on + strand, within GFF4281at 260.419 kb on + strand, within GFF4281at 260.419 kb on + strand, within GFF4281at 260.419 kb on + strand, within GFF4281at 260.419 kb on + strand, within GFF4281at 260.419 kb on + strand, within GFF4281at 260.419 kb on + strand, within GFF4281at 260.419 kb on + strand, within GFF4281at 260.420 kb on - strand, within GFF4281at 260.420 kb on - strand, within GFF4281at 260.420 kb on - strand, within GFF4281at 260.420 kb on - strand, within GFF4281at 260.420 kb on - strand, within GFF4281at 260.422 kb on + strand, within GFF4281at 260.422 kb on + strand, within GFF4281at 260.422 kb on + strand, within GFF4281at 260.422 kb on + strand, within GFF4281at 260.422 kb on + strand, within GFF4281at 260.422 kb on + strand, within GFF4281at 260.423 kb on - strand, within GFF4281at 260.495 kb on - strand, within GFF4281at 260.503 kb on + strand, within GFF4281at 260.503 kb on + strand, within GFF4281at 260.503 kb on + strand, within GFF4281at 260.504 kb on - strand, within GFF4281at 260.504 kb on - strand, within GFF4281at 260.504 kb on - strand, within GFF4281at 260.509 kb on + strand, within GFF4281at 260.678 kb on + strand, within GFF4281at 260.697 kb on - strand, within GFF4281at 260.697 kb on - strand, within GFF4281at 260.697 kb on - strand, within GFF4281at 261.011 kb on - strand, within GFF4281at 261.115 kb on + strand, within GFF4281at 261.115 kb on + strand, within GFF4281at 261.414 kb on + strand, within GFF4281at 261.414 kb on + strand, within GFF4281at 261.414 kb on + strand, within GFF4281at 261.414 kb on + strand, within GFF4281at 261.414 kb on + strand, within GFF4281at 261.415 kb on - strand, within GFF4281at 261.415 kb on - strand, within GFF4281at 261.415 kb on - strand, within GFF4281at 261.574 kb on + strandat 261.575 kb on - strandat 261.575 kb on - strandat 261.575 kb on - strandat 261.605 kb on + strandat 261.605 kb on + strandat 261.605 kb on + strandat 261.606 kb on - strandat 261.606 kb on - strandat 261.606 kb on - strandat 261.606 kb on - strandat 262.008 kb on - strand, within GFF4282at 262.008 kb on - strand, within GFF4282at 262.030 kb on - strand, within GFF4282at 262.074 kb on - strand, within GFF4282at 262.085 kb on + strand, within GFF4282at 262.085 kb on + strand, within GFF4282at 262.158 kb on - strand, within GFF4282at 262.418 kb on + strand, within GFF4282at 262.419 kb on - strand, within GFF4282at 262.478 kb on + strand, within GFF4282at 262.478 kb on + strand, within GFF4282at 262.478 kb on + strand, within GFF4282at 262.478 kb on + strand, within GFF4282at 262.479 kb on - strand, within GFF4282at 262.479 kb on - strand, within GFF4282at 262.479 kb on - strand, within GFF4282at 262.479 kb on - strand, within GFF4282at 262.479 kb on - strand, within GFF4282at 262.479 kb on - strand, within GFF4282at 262.479 kb on - strand, within GFF4282at 262.479 kb on - strand, within GFF4282at 262.527 kb on - strand, within GFF4282

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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259,388 + GFF4280 0.41 -0.8
259,390 + GFF4280 0.42 +1.2
259,390 + GFF4280 0.42 -0.3
259,391 - GFF4280 0.42 -1.4
259,391 - GFF4280 0.42 -0.3
259,391 - GFF4280 0.42 -0.6
259,391 - GFF4280 0.42 +0.6
259,391 - GFF4280 0.42 -1.2
259,391 - GFF4280 0.42 +0.3
259,541 + GFF4280 0.58 -1.4
259,543 + GFF4280 0.59 +0.9
259,543 + GFF4280 0.59 -0.7
259,544 - GFF4280 0.59 +0.3
259,544 - GFF4280 0.59 -0.1
259,544 - GFF4280 0.59 +0.2
259,702 - GFF4280 0.76 -0.0
259,901 + -0.3
259,901 + -1.1
260,021 + +0.3
260,022 - +1.6
260,135 + +0.3
260,136 - -0.6
260,136 - -0.0
260,136 - -1.2
260,139 + -0.6
260,139 + +0.6
260,139 + -0.6
260,139 + +0.2
260,140 - +0.6
260,299 + +0.2
260,300 - +1.3
260,300 - +0.6
260,331 - +0.2
260,419 + GFF4281 0.13 -0.0
260,419 + GFF4281 0.13 +1.0
260,419 + GFF4281 0.13 -0.0
260,419 + GFF4281 0.13 +0.9
260,419 + GFF4281 0.13 +0.2
260,419 + GFF4281 0.13 +0.2
260,419 + GFF4281 0.13 -1.0
260,419 + GFF4281 0.13 -0.5
260,419 + GFF4281 0.13 +0.1
260,419 + GFF4281 0.13 +1.1
260,419 + GFF4281 0.13 -0.0
260,420 - GFF4281 0.13 +1.3
260,420 - GFF4281 0.13 +0.3
260,420 - GFF4281 0.13 +0.2
260,420 - GFF4281 0.13 +0.9
260,420 - GFF4281 0.13 +0.6
260,422 + GFF4281 0.13 -0.1
260,422 + GFF4281 0.13 -0.7
260,422 + GFF4281 0.13 -0.1
260,422 + GFF4281 0.13 +0.1
260,422 + GFF4281 0.13 -0.2
260,422 + GFF4281 0.13 +0.4
260,423 - GFF4281 0.13 +0.3
260,495 - GFF4281 0.18 -0.8
260,503 + GFF4281 0.19 +0.8
260,503 + GFF4281 0.19 -0.8
260,503 + GFF4281 0.19 +0.7
260,504 - GFF4281 0.19 +1.5
260,504 - GFF4281 0.19 -0.3
260,504 - GFF4281 0.19 +0.1
260,509 + GFF4281 0.19 +0.2
260,678 + GFF4281 0.32 -0.1
260,697 - GFF4281 0.33 -0.2
260,697 - GFF4281 0.33 +0.5
260,697 - GFF4281 0.33 +0.3
261,011 - GFF4281 0.56 -0.0
261,115 + GFF4281 0.63 +0.9
261,115 + GFF4281 0.63 +0.4
261,414 + GFF4281 0.85 -0.2
261,414 + GFF4281 0.85 -0.0
261,414 + GFF4281 0.85 +0.3
261,414 + GFF4281 0.85 +1.4
261,414 + GFF4281 0.85 +0.8
261,415 - GFF4281 0.85 +0.5
261,415 - GFF4281 0.85 +0.8
261,415 - GFF4281 0.85 +0.9
261,574 + +1.7
261,575 - +0.8
261,575 - -0.1
261,575 - +1.0
261,605 + +0.1
261,605 + +0.3
261,605 + -0.0
261,606 - -3.5
261,606 - +0.6
261,606 - -1.2
261,606 - -0.3
262,008 - GFF4282 0.19 +1.0
262,008 - GFF4282 0.19 -0.5
262,030 - GFF4282 0.20 -0.4
262,074 - GFF4282 0.22 +1.1
262,085 + GFF4282 0.22 +0.2
262,085 + GFF4282 0.22 +0.2
262,158 - GFF4282 0.26 +0.2
262,418 + GFF4282 0.38 -0.0
262,419 - GFF4282 0.38 -0.3
262,478 + GFF4282 0.41 +0.6
262,478 + GFF4282 0.41 -0.1
262,478 + GFF4282 0.41 +0.8
262,478 + GFF4282 0.41 +0.1
262,479 - GFF4282 0.41 +0.6
262,479 - GFF4282 0.41 +0.3
262,479 - GFF4282 0.41 +1.3
262,479 - GFF4282 0.41 -0.1
262,479 - GFF4282 0.41 +1.6
262,479 - GFF4282 0.41 +0.8
262,479 - GFF4282 0.41 +0.4
262,479 - GFF4282 0.41 -0.6
262,527 - GFF4282 0.43 +1.3

Or see this region's nucleotide sequence