Strain Fitness in Pseudomonas sp. DMC3 around GFF428

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF427 and GFF428 are separated by 79 nucleotidesGFF428 and GFF429 are separated by 62 nucleotides GFF427 - ATP-dependent DNA helicase RecG, at 467,343 to 469,418 GFF427 GFF428 - hypothetical protein, at 469,498 to 470,898 GFF428 GFF429 - hypothetical protein, at 470,961 to 472,319 GFF429 Position (kb) 469 470 471Strain fitness (log2 ratio) -2 -1 0 1 2 3at 468.795 kb on + strand, within GFF427at 468.795 kb on + strand, within GFF427at 468.796 kb on - strand, within GFF427at 469.128 kb on + strand, within GFF427at 469.129 kb on - strand, within GFF427at 469.404 kb on + strandat 469.405 kb on - strandat 469.449 kb on + strandat 469.449 kb on + strandat 469.461 kb on + strandat 469.461 kb on + strandat 469.462 kb on - strandat 469.462 kb on - strandat 469.462 kb on - strandat 469.463 kb on + strandat 469.463 kb on + strandat 469.463 kb on + strandat 469.463 kb on + strandat 469.463 kb on + strandat 469.463 kb on + strandat 469.463 kb on + strandat 469.464 kb on - strandat 469.464 kb on - strandat 469.464 kb on - strandat 469.464 kb on - strandat 469.464 kb on - strandat 469.464 kb on - strandat 469.490 kb on + strandat 469.731 kb on + strand, within GFF428at 469.829 kb on - strand, within GFF428at 469.829 kb on - strand, within GFF428at 470.160 kb on - strand, within GFF428at 470.215 kb on + strand, within GFF428at 470.215 kb on + strand, within GFF428at 470.216 kb on - strand, within GFF428at 470.218 kb on + strand, within GFF428at 470.218 kb on + strand, within GFF428at 470.219 kb on - strand, within GFF428at 470.286 kb on - strand, within GFF428at 470.380 kb on + strand, within GFF428at 470.380 kb on + strand, within GFF428at 470.380 kb on + strand, within GFF428at 470.381 kb on - strand, within GFF428at 470.381 kb on - strand, within GFF428at 470.452 kb on + strand, within GFF428at 470.482 kb on + strand, within GFF428at 470.566 kb on + strand, within GFF428at 470.566 kb on + strand, within GFF428at 470.566 kb on + strand, within GFF428at 470.566 kb on + strand, within GFF428at 470.566 kb on + strand, within GFF428at 470.566 kb on + strand, within GFF428at 470.566 kb on + strand, within GFF428at 470.567 kb on - strand, within GFF428at 470.567 kb on - strand, within GFF428at 470.567 kb on - strand, within GFF428at 470.567 kb on - strand, within GFF428at 470.568 kb on + strand, within GFF428at 470.589 kb on + strand, within GFF428at 470.683 kb on + strand, within GFF428at 470.683 kb on + strand, within GFF428at 470.683 kb on + strand, within GFF428at 470.684 kb on - strand, within GFF428at 470.684 kb on - strand, within GFF428at 470.704 kb on + strand, within GFF428at 470.705 kb on - strand, within GFF428at 470.775 kb on + strandat 470.775 kb on + strandat 470.775 kb on + strandat 470.775 kb on + strandat 470.776 kb on - strandat 470.776 kb on - strandat 470.896 kb on + strandat 470.896 kb on + strandat 470.897 kb on - strandat 470.959 kb on + strandat 470.994 kb on - strandat 471.032 kb on + strandat 471.032 kb on + strandat 471.032 kb on + strandat 471.032 kb on + strandat 471.033 kb on - strandat 471.033 kb on - strandat 471.092 kb on + strandat 471.092 kb on + strandat 471.092 kb on + strandat 471.092 kb on + strandat 471.092 kb on + strandat 471.093 kb on - strandat 471.093 kb on - strandat 471.095 kb on + strandat 471.095 kb on + strandat 471.096 kb on - strandat 471.096 kb on - strandat 471.096 kb on - strandat 471.102 kb on + strand, within GFF429at 471.103 kb on - strand, within GFF429at 471.106 kb on + strand, within GFF429at 471.106 kb on + strand, within GFF429at 471.106 kb on + strand, within GFF429at 471.106 kb on + strand, within GFF429at 471.107 kb on - strand, within GFF429at 471.107 kb on - strand, within GFF429at 471.141 kb on - strand, within GFF429at 471.148 kb on + strand, within GFF429at 471.148 kb on + strand, within GFF429at 471.149 kb on - strand, within GFF429at 471.149 kb on - strand, within GFF429at 471.180 kb on + strand, within GFF429at 471.180 kb on + strand, within GFF429at 471.233 kb on + strand, within GFF429at 471.242 kb on + strand, within GFF429at 471.284 kb on + strand, within GFF429at 471.289 kb on - strand, within GFF429at 471.402 kb on + strand, within GFF429at 471.402 kb on + strand, within GFF429at 471.403 kb on - strand, within GFF429at 471.403 kb on - strand, within GFF429at 471.517 kb on + strand, within GFF429at 471.517 kb on + strand, within GFF429at 471.517 kb on + strand, within GFF429at 471.517 kb on + strand, within GFF429at 471.517 kb on + strand, within GFF429at 471.517 kb on + strand, within GFF429at 471.517 kb on + strand, within GFF429at 471.517 kb on + strand, within GFF429at 471.517 kb on + strand, within GFF429at 471.517 kb on + strand, within GFF429at 471.517 kb on + strand, within GFF429at 471.518 kb on - strand, within GFF429at 471.518 kb on - strand, within GFF429at 471.518 kb on - strand, within GFF429at 471.518 kb on - strand, within GFF429at 471.518 kb on - strand, within GFF429at 471.518 kb on - strand, within GFF429at 471.553 kb on + strand, within GFF429at 471.553 kb on + strand, within GFF429at 471.554 kb on - strand, within GFF429at 471.573 kb on + strand, within GFF429at 471.573 kb on + strand, within GFF429at 471.573 kb on + strand, within GFF429at 471.574 kb on - strand, within GFF429at 471.574 kb on - strand, within GFF429at 471.707 kb on + strand, within GFF429at 471.708 kb on - strand, within GFF429at 471.708 kb on - strand, within GFF429at 471.740 kb on - strand, within GFF429at 471.740 kb on - strand, within GFF429at 471.830 kb on + strand, within GFF429at 471.830 kb on + strand, within GFF429at 471.830 kb on + strand, within GFF429at 471.830 kb on + strand, within GFF429at 471.830 kb on + strand, within GFF429at 471.830 kb on + strand, within GFF429at 471.831 kb on - strand, within GFF429at 471.831 kb on - strand, within GFF429

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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468,795 + GFF427 0.70 -0.2
468,795 + GFF427 0.70 -0.6
468,796 - GFF427 0.70 -1.2
469,128 + GFF427 0.86 -0.5
469,129 - GFF427 0.86 +0.2
469,404 + -0.4
469,405 - +0.0
469,449 + -1.9
469,449 + -0.1
469,461 + -0.7
469,461 + +0.7
469,462 - -0.5
469,462 - +0.3
469,462 - +0.1
469,463 + -0.8
469,463 + +1.0
469,463 + +1.0
469,463 + +0.6
469,463 + -1.0
469,463 + +1.2
469,463 + -0.4
469,464 - +2.2
469,464 - -0.5
469,464 - +0.3
469,464 - +0.5
469,464 - +0.0
469,464 - -0.4
469,490 + +0.6
469,731 + GFF428 0.17 +2.3
469,829 - GFF428 0.24 -0.1
469,829 - GFF428 0.24 +0.7
470,160 - GFF428 0.47 +0.0
470,215 + GFF428 0.51 +1.9
470,215 + GFF428 0.51 -0.4
470,216 - GFF428 0.51 +2.8
470,218 + GFF428 0.51 +0.3
470,218 + GFF428 0.51 -0.6
470,219 - GFF428 0.51 +0.8
470,286 - GFF428 0.56 +0.3
470,380 + GFF428 0.63 +0.6
470,380 + GFF428 0.63 +0.8
470,380 + GFF428 0.63 +0.3
470,381 - GFF428 0.63 +0.2
470,381 - GFF428 0.63 +0.6
470,452 + GFF428 0.68 +1.6
470,482 + GFF428 0.70 +0.8
470,566 + GFF428 0.76 +1.3
470,566 + GFF428 0.76 +0.0
470,566 + GFF428 0.76 +0.4
470,566 + GFF428 0.76 +1.3
470,566 + GFF428 0.76 +1.1
470,566 + GFF428 0.76 +0.8
470,566 + GFF428 0.76 +0.2
470,567 - GFF428 0.76 +0.9
470,567 - GFF428 0.76 +0.0
470,567 - GFF428 0.76 +0.5
470,567 - GFF428 0.76 +0.9
470,568 + GFF428 0.76 -1.6
470,589 + GFF428 0.78 +1.6
470,683 + GFF428 0.85 +0.6
470,683 + GFF428 0.85 +0.8
470,683 + GFF428 0.85 +1.2
470,684 - GFF428 0.85 +0.5
470,684 - GFF428 0.85 -0.2
470,704 + GFF428 0.86 -0.6
470,705 - GFF428 0.86 +0.3
470,775 + -1.1
470,775 + +1.6
470,775 + +0.6
470,775 + +0.8
470,776 - +0.4
470,776 - -0.3
470,896 + +0.2
470,896 + -0.7
470,897 - +1.2
470,959 + +0.1
470,994 - -0.5
471,032 + +0.1
471,032 + -1.4
471,032 + -1.9
471,032 + -0.6
471,033 - -0.9
471,033 - +0.8
471,092 + -0.3
471,092 + -1.3
471,092 + -0.3
471,092 + -0.1
471,092 + -0.8
471,093 - +1.3
471,093 - +0.3
471,095 + -0.5
471,095 + -0.4
471,096 - +1.4
471,096 - +0.3
471,096 - +0.4
471,102 + GFF429 0.10 -0.1
471,103 - GFF429 0.10 -0.3
471,106 + GFF429 0.11 +0.1
471,106 + GFF429 0.11 +0.2
471,106 + GFF429 0.11 +0.2
471,106 + GFF429 0.11 +0.9
471,107 - GFF429 0.11 -0.8
471,107 - GFF429 0.11 -0.6
471,141 - GFF429 0.13 +0.6
471,148 + GFF429 0.14 -0.4
471,148 + GFF429 0.14 -1.2
471,149 - GFF429 0.14 +1.3
471,149 - GFF429 0.14 +0.6
471,180 + GFF429 0.16 +0.2
471,180 + GFF429 0.16 +0.3
471,233 + GFF429 0.20 +1.9
471,242 + GFF429 0.21 +0.1
471,284 + GFF429 0.24 -0.5
471,289 - GFF429 0.24 -0.2
471,402 + GFF429 0.32 +0.0
471,402 + GFF429 0.32 -0.6
471,403 - GFF429 0.33 +0.3
471,403 - GFF429 0.33 +1.6
471,517 + GFF429 0.41 +0.0
471,517 + GFF429 0.41 +0.8
471,517 + GFF429 0.41 +0.1
471,517 + GFF429 0.41 +0.3
471,517 + GFF429 0.41 +0.6
471,517 + GFF429 0.41 -0.1
471,517 + GFF429 0.41 +0.6
471,517 + GFF429 0.41 -1.1
471,517 + GFF429 0.41 +0.1
471,517 + GFF429 0.41 +0.3
471,517 + GFF429 0.41 -0.2
471,518 - GFF429 0.41 -1.2
471,518 - GFF429 0.41 -0.4
471,518 - GFF429 0.41 -0.4
471,518 - GFF429 0.41 -0.8
471,518 - GFF429 0.41 -0.7
471,518 - GFF429 0.41 +0.5
471,553 + GFF429 0.44 +2.0
471,553 + GFF429 0.44 +0.6
471,554 - GFF429 0.44 +0.5
471,573 + GFF429 0.45 -1.0
471,573 + GFF429 0.45 +0.1
471,573 + GFF429 0.45 +0.5
471,574 - GFF429 0.45 -0.4
471,574 - GFF429 0.45 +0.5
471,707 + GFF429 0.55 -0.5
471,708 - GFF429 0.55 +2.1
471,708 - GFF429 0.55 +0.3
471,740 - GFF429 0.57 -1.5
471,740 - GFF429 0.57 +1.1
471,830 + GFF429 0.64 +1.3
471,830 + GFF429 0.64 -1.4
471,830 + GFF429 0.64 -0.1
471,830 + GFF429 0.64 -0.2
471,830 + GFF429 0.64 -0.7
471,830 + GFF429 0.64 +0.9
471,831 - GFF429 0.64 +0.9
471,831 - GFF429 0.64 +0.2

Or see this region's nucleotide sequence