Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4241 and GFF4242 are separated by 136 nucleotides GFF4242 and GFF4243 are separated by 11 nucleotides GFF4243 and GFF4244 are separated by 160 nucleotides GFF4244 and GFF4245 are separated by 84 nucleotides
GFF4241 - Transcriptional activator protein CzcR, at 216,797 to 217,477
GFF4241
GFF4242 - hypothetical protein, at 217,614 to 218,099
GFF4242
GFF4243 - 5-hydroxyisourate hydrolase, at 218,111 to 218,521
GFF4243
GFF4244 - CRP-like cAMP-activated global transcriptional regulator, at 218,682 to 219,359
GFF4244
GFF4245 - hypothetical protein, at 219,444 to 219,971
GFF4245
Position (kb) 218
219 Strain fitness (log2 ratio) -2
-1
0
1
2 at 217.188 kb on + strand, within GFF4241 at 217.189 kb on - strand, within GFF4241 at 217.344 kb on + strand, within GFF4241 at 217.344 kb on + strand, within GFF4241 at 217.345 kb on - strand, within GFF4241 at 217.360 kb on + strand, within GFF4241 at 217.365 kb on + strand, within GFF4241 at 217.461 kb on - strand at 217.499 kb on + strand at 217.499 kb on + strand at 217.499 kb on + strand at 217.500 kb on - strand at 217.500 kb on - strand at 217.508 kb on + strand at 217.535 kb on - strand at 217.545 kb on - strand at 217.582 kb on - strand at 217.626 kb on + strand at 217.627 kb on - strand at 217.627 kb on - strand at 217.854 kb on + strand, within GFF4242 at 217.854 kb on + strand, within GFF4242 at 217.854 kb on + strand, within GFF4242 at 217.854 kb on + strand, within GFF4242 at 218.105 kb on + strand at 218.105 kb on + strand at 218.105 kb on + strand at 218.105 kb on + strand at 218.106 kb on - strand at 218.106 kb on - strand at 218.106 kb on - strand at 218.106 kb on - strand at 218.388 kb on - strand, within GFF4243 at 218.390 kb on + strand, within GFF4243 at 218.390 kb on + strand, within GFF4243 at 218.391 kb on - strand, within GFF4243 at 218.520 kb on - strand at 218.520 kb on - strand at 218.541 kb on + strand at 218.570 kb on + strand at 218.683 kb on + strand at 218.683 kb on + strand at 218.737 kb on + strand at 218.872 kb on + strand, within GFF4244 at 219.057 kb on - strand, within GFF4244 at 219.057 kb on - strand, within GFF4244 at 219.073 kb on + strand, within GFF4244 at 219.074 kb on - strand, within GFF4244 at 219.074 kb on - strand, within GFF4244 at 219.074 kb on - strand, within GFF4244 at 219.474 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 217,188 + GFF4241 0.57 -0.3 217,189 - GFF4241 0.58 +0.1 217,344 + GFF4241 0.80 +0.4 217,344 + GFF4241 0.80 -0.0 217,345 - GFF4241 0.80 -0.1 217,360 + GFF4241 0.83 +0.1 217,365 + GFF4241 0.83 -0.3 217,461 - +0.0 217,499 + -0.2 217,499 + +0.6 217,499 + +0.4 217,500 - -0.4 217,500 - +0.4 217,508 + -0.3 217,535 - -1.2 217,545 - -0.4 217,582 - +0.1 217,626 + -0.5 217,627 - -0.7 217,627 - -2.6 217,854 + GFF4242 0.49 -0.9 217,854 + GFF4242 0.49 +1.5 217,854 + GFF4242 0.49 +0.1 217,854 + GFF4242 0.49 +0.6 218,105 + -0.2 218,105 + +0.1 218,105 + +0.3 218,105 + -0.2 218,106 - +0.1 218,106 - -0.7 218,106 - -0.7 218,106 - +0.7 218,388 - GFF4243 0.67 +0.1 218,390 + GFF4243 0.68 -0.0 218,390 + GFF4243 0.68 +0.1 218,391 - GFF4243 0.68 +2.1 218,520 - +0.4 218,520 - +0.5 218,541 + +0.6 218,570 + -0.3 218,683 + -0.2 218,683 + -0.1 218,737 + -0.6 218,872 + GFF4244 0.28 +0.4 219,057 - GFF4244 0.55 -0.3 219,057 - GFF4244 0.55 -1.5 219,073 + GFF4244 0.58 -0.7 219,074 - GFF4244 0.58 +2.5 219,074 - GFF4244 0.58 +0.9 219,074 - GFF4244 0.58 -0.6 219,474 + -0.1
Or see this region's nucleotide sequence