Strain Fitness in Pseudomonas sp. DMC3 around GFF4218

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4216 and GFF4217 overlap by 4 nucleotidesGFF4217 and GFF4218 overlap by 20 nucleotidesGFF4218 and GFF4219 are separated by 280 nucleotidesGFF4219 and GFF4220 are separated by 294 nucleotides GFF4216 - Glutamine transport ATP-binding protein GlnQ, at 189,350 to 190,132 GFF4216 GFF4217 - Glutamine transport system permease protein GlnP, at 190,129 to 190,788 GFF4217 GFF4218 - Glutamine transport system permease protein GlnP, at 190,769 to 191,434 GFF4218 GFF4219 - hypothetical protein, at 191,715 to 191,804 GFF4219 GFF4220 - Methionine-binding lipoprotein MetQ, at 192,099 to 192,896 GFF4220 Position (kb) 190 191 192Strain fitness (log2 ratio) -1 0 1 2at 189.867 kb on + strand, within GFF4216at 189.867 kb on + strand, within GFF4216at 189.868 kb on - strand, within GFF4216at 190.093 kb on - strandat 190.217 kb on + strand, within GFF4217at 190.235 kb on + strand, within GFF4217at 190.235 kb on + strand, within GFF4217at 190.325 kb on + strand, within GFF4217at 190.326 kb on - strand, within GFF4217at 190.379 kb on + strand, within GFF4217at 190.380 kb on - strand, within GFF4217at 190.385 kb on + strand, within GFF4217at 190.386 kb on - strand, within GFF4217at 190.571 kb on + strand, within GFF4217at 190.571 kb on + strand, within GFF4217at 190.571 kb on + strand, within GFF4217at 190.571 kb on + strand, within GFF4217at 190.572 kb on - strand, within GFF4217at 190.572 kb on - strand, within GFF4217at 190.572 kb on - strand, within GFF4217at 190.572 kb on - strand, within GFF4217at 190.613 kb on + strand, within GFF4217at 190.613 kb on + strand, within GFF4217at 190.613 kb on + strand, within GFF4217at 190.613 kb on + strand, within GFF4217at 190.613 kb on + strand, within GFF4217at 190.613 kb on + strand, within GFF4217at 190.614 kb on - strand, within GFF4217at 190.614 kb on - strand, within GFF4217at 190.614 kb on - strand, within GFF4217at 190.643 kb on - strand, within GFF4217at 190.667 kb on + strand, within GFF4217at 190.667 kb on + strand, within GFF4217at 190.667 kb on + strand, within GFF4217at 190.668 kb on - strand, within GFF4217at 190.756 kb on + strandat 190.887 kb on + strand, within GFF4218at 190.888 kb on - strand, within GFF4218at 190.891 kb on - strand, within GFF4218at 190.903 kb on - strand, within GFF4218at 190.903 kb on - strand, within GFF4218at 190.918 kb on - strand, within GFF4218at 191.032 kb on - strand, within GFF4218at 191.039 kb on + strand, within GFF4218at 191.040 kb on - strand, within GFF4218at 191.040 kb on - strand, within GFF4218at 191.130 kb on + strand, within GFF4218at 191.212 kb on - strand, within GFF4218at 191.258 kb on + strand, within GFF4218at 191.258 kb on + strand, within GFF4218at 191.259 kb on - strand, within GFF4218at 191.259 kb on - strand, within GFF4218at 191.259 kb on - strand, within GFF4218at 191.259 kb on - strand, within GFF4218at 191.259 kb on - strand, within GFF4218at 191.259 kb on - strand, within GFF4218at 191.262 kb on + strand, within GFF4218at 191.286 kb on + strand, within GFF4218at 191.286 kb on + strand, within GFF4218at 191.287 kb on - strand, within GFF4218at 191.414 kb on - strandat 191.422 kb on - strandat 191.422 kb on - strandat 191.574 kb on + strandat 191.575 kb on - strandat 191.575 kb on - strandat 191.600 kb on + strandat 191.600 kb on + strandat 191.600 kb on + strandat 191.601 kb on - strandat 191.601 kb on - strandat 191.627 kb on - strandat 191.712 kb on - strandat 191.722 kb on + strandat 191.722 kb on + strandat 191.722 kb on + strandat 191.723 kb on - strandat 191.803 kb on - strandat 191.803 kb on - strandat 191.871 kb on + strandat 191.871 kb on + strandat 191.871 kb on + strandat 191.872 kb on - strandat 191.898 kb on + strandat 191.898 kb on + strandat 191.939 kb on + strandat 191.939 kb on + strandat 191.955 kb on + strandat 191.955 kb on + strandat 191.956 kb on - strandat 192.127 kb on + strandat 192.128 kb on - strandat 192.128 kb on - strandat 192.235 kb on + strand, within GFF4220at 192.236 kb on - strand, within GFF4220at 192.301 kb on + strand, within GFF4220at 192.302 kb on - strand, within GFF4220at 192.302 kb on - strand, within GFF4220at 192.302 kb on - strand, within GFF4220at 192.302 kb on - strand, within GFF4220

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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189,867 + GFF4216 0.66 -0.2
189,867 + GFF4216 0.66 +0.7
189,868 - GFF4216 0.66 +0.2
190,093 - -0.6
190,217 + GFF4217 0.13 -1.2
190,235 + GFF4217 0.16 +0.6
190,235 + GFF4217 0.16 -0.9
190,325 + GFF4217 0.30 +0.3
190,326 - GFF4217 0.30 -0.4
190,379 + GFF4217 0.38 -0.2
190,380 - GFF4217 0.38 +0.2
190,385 + GFF4217 0.39 +1.1
190,386 - GFF4217 0.39 -0.3
190,571 + GFF4217 0.67 -0.1
190,571 + GFF4217 0.67 -0.5
190,571 + GFF4217 0.67 +0.4
190,571 + GFF4217 0.67 +0.3
190,572 - GFF4217 0.67 -0.1
190,572 - GFF4217 0.67 -0.5
190,572 - GFF4217 0.67 +0.8
190,572 - GFF4217 0.67 -0.3
190,613 + GFF4217 0.73 -0.9
190,613 + GFF4217 0.73 +1.0
190,613 + GFF4217 0.73 -0.0
190,613 + GFF4217 0.73 +0.4
190,613 + GFF4217 0.73 +0.6
190,613 + GFF4217 0.73 +0.1
190,614 - GFF4217 0.73 +0.2
190,614 - GFF4217 0.73 +0.6
190,614 - GFF4217 0.73 +0.2
190,643 - GFF4217 0.78 +1.1
190,667 + GFF4217 0.82 -1.3
190,667 + GFF4217 0.82 -0.5
190,667 + GFF4217 0.82 +0.7
190,668 - GFF4217 0.82 -0.3
190,756 + +0.4
190,887 + GFF4218 0.18 +0.7
190,888 - GFF4218 0.18 +0.1
190,891 - GFF4218 0.18 -0.4
190,903 - GFF4218 0.20 +0.0
190,903 - GFF4218 0.20 +1.0
190,918 - GFF4218 0.22 -0.5
191,032 - GFF4218 0.39 -0.1
191,039 + GFF4218 0.41 +1.0
191,040 - GFF4218 0.41 -0.3
191,040 - GFF4218 0.41 -0.6
191,130 + GFF4218 0.54 -0.0
191,212 - GFF4218 0.67 -0.4
191,258 + GFF4218 0.73 +0.8
191,258 + GFF4218 0.73 +0.7
191,259 - GFF4218 0.74 -0.0
191,259 - GFF4218 0.74 +0.5
191,259 - GFF4218 0.74 -0.7
191,259 - GFF4218 0.74 +0.2
191,259 - GFF4218 0.74 -0.3
191,259 - GFF4218 0.74 +1.0
191,262 + GFF4218 0.74 +0.8
191,286 + GFF4218 0.78 +1.3
191,286 + GFF4218 0.78 +0.8
191,287 - GFF4218 0.78 +0.2
191,414 - +0.6
191,422 - -0.0
191,422 - +0.6
191,574 + -0.5
191,575 - +1.4
191,575 - -1.7
191,600 + -0.2
191,600 + -1.2
191,600 + -0.8
191,601 - -1.1
191,601 - +1.2
191,627 - -0.2
191,712 - +0.6
191,722 + -1.3
191,722 + -0.0
191,722 + -0.2
191,723 - +0.4
191,803 - -0.3
191,803 - +0.6
191,871 + +0.0
191,871 + +0.2
191,871 + +0.9
191,872 - -1.2
191,898 + -0.0
191,898 + +0.2
191,939 + -0.7
191,939 + -0.3
191,955 + +1.8
191,955 + -0.4
191,956 - +0.6
192,127 + +0.5
192,128 - -0.8
192,128 - +0.5
192,235 + GFF4220 0.17 -0.1
192,236 - GFF4220 0.17 +0.7
192,301 + GFF4220 0.25 +0.6
192,302 - GFF4220 0.25 +0.8
192,302 - GFF4220 0.25 +0.2
192,302 - GFF4220 0.25 -0.7
192,302 - GFF4220 0.25 -0.1

Or see this region's nucleotide sequence