Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4214 and GFF4215 are separated by 118 nucleotides GFF4215 and GFF4216 overlap by 4 nucleotides GFF4216 and GFF4217 overlap by 4 nucleotides GFF4217 and GFF4218 overlap by 20 nucleotides
GFF4214 - hypothetical protein, at 187,202 to 188,362
GFF4214
GFF4215 - ABC transporter glutamine-binding protein GlnH, at 188,481 to 189,353
GFF4215
GFF4216 - Glutamine transport ATP-binding protein GlnQ, at 189,350 to 190,132
GFF4216
GFF4217 - Glutamine transport system permease protein GlnP, at 190,129 to 190,788
GFF4217
GFF4218 - Glutamine transport system permease protein GlnP, at 190,769 to 191,434
GFF4218
Position (kb) 189
190
191 Strain fitness (log2 ratio) -1
0
1
2 at 188.360 kb on + strand at 188.361 kb on - strand at 188.554 kb on + strand at 188.555 kb on - strand at 188.555 kb on - strand at 188.555 kb on - strand at 188.563 kb on + strand at 188.578 kb on + strand, within GFF4215 at 188.750 kb on - strand, within GFF4215 at 189.145 kb on + strand, within GFF4215 at 189.145 kb on + strand, within GFF4215 at 189.146 kb on - strand, within GFF4215 at 189.146 kb on - strand, within GFF4215 at 189.192 kb on + strand, within GFF4215 at 189.192 kb on + strand, within GFF4215 at 189.192 kb on + strand, within GFF4215 at 189.193 kb on - strand, within GFF4215 at 189.193 kb on - strand, within GFF4215 at 189.334 kb on - strand at 189.353 kb on + strand at 189.867 kb on + strand, within GFF4216 at 189.867 kb on + strand, within GFF4216 at 189.868 kb on - strand, within GFF4216 at 190.093 kb on - strand at 190.217 kb on + strand, within GFF4217 at 190.235 kb on + strand, within GFF4217 at 190.235 kb on + strand, within GFF4217 at 190.325 kb on + strand, within GFF4217 at 190.326 kb on - strand, within GFF4217 at 190.379 kb on + strand, within GFF4217 at 190.380 kb on - strand, within GFF4217 at 190.385 kb on + strand, within GFF4217 at 190.386 kb on - strand, within GFF4217 at 190.571 kb on + strand, within GFF4217 at 190.571 kb on + strand, within GFF4217 at 190.571 kb on + strand, within GFF4217 at 190.571 kb on + strand, within GFF4217 at 190.572 kb on - strand, within GFF4217 at 190.572 kb on - strand, within GFF4217 at 190.572 kb on - strand, within GFF4217 at 190.572 kb on - strand, within GFF4217 at 190.613 kb on + strand, within GFF4217 at 190.613 kb on + strand, within GFF4217 at 190.613 kb on + strand, within GFF4217 at 190.613 kb on + strand, within GFF4217 at 190.613 kb on + strand, within GFF4217 at 190.613 kb on + strand, within GFF4217 at 190.614 kb on - strand, within GFF4217 at 190.614 kb on - strand, within GFF4217 at 190.614 kb on - strand, within GFF4217 at 190.643 kb on - strand, within GFF4217 at 190.667 kb on + strand, within GFF4217 at 190.667 kb on + strand, within GFF4217 at 190.667 kb on + strand, within GFF4217 at 190.668 kb on - strand, within GFF4217 at 190.756 kb on + strand at 190.887 kb on + strand, within GFF4218 at 190.888 kb on - strand, within GFF4218 at 190.891 kb on - strand, within GFF4218 at 190.903 kb on - strand, within GFF4218 at 190.903 kb on - strand, within GFF4218 at 190.918 kb on - strand, within GFF4218 at 191.032 kb on - strand, within GFF4218 at 191.039 kb on + strand, within GFF4218 at 191.040 kb on - strand, within GFF4218 at 191.040 kb on - strand, within GFF4218 at 191.130 kb on + strand, within GFF4218
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 188,360 + -0.4 188,361 - +1.0 188,554 + -0.2 188,555 - -0.6 188,555 - +0.3 188,555 - -1.2 188,563 + +1.6 188,578 + GFF4215 0.11 +0.6 188,750 - GFF4215 0.31 -0.6 189,145 + GFF4215 0.76 +0.3 189,145 + GFF4215 0.76 -0.2 189,146 - GFF4215 0.76 +1.8 189,146 - GFF4215 0.76 -0.2 189,192 + GFF4215 0.81 +0.8 189,192 + GFF4215 0.81 -0.7 189,192 + GFF4215 0.81 +0.3 189,193 - GFF4215 0.82 -0.8 189,193 - GFF4215 0.82 -0.5 189,334 - -0.7 189,353 + +0.6 189,867 + GFF4216 0.66 -0.2 189,867 + GFF4216 0.66 +0.7 189,868 - GFF4216 0.66 +0.2 190,093 - -0.6 190,217 + GFF4217 0.13 -1.2 190,235 + GFF4217 0.16 +0.6 190,235 + GFF4217 0.16 -0.9 190,325 + GFF4217 0.30 +0.3 190,326 - GFF4217 0.30 -0.4 190,379 + GFF4217 0.38 -0.2 190,380 - GFF4217 0.38 +0.2 190,385 + GFF4217 0.39 +1.1 190,386 - GFF4217 0.39 -0.3 190,571 + GFF4217 0.67 -0.1 190,571 + GFF4217 0.67 -0.5 190,571 + GFF4217 0.67 +0.4 190,571 + GFF4217 0.67 +0.3 190,572 - GFF4217 0.67 -0.1 190,572 - GFF4217 0.67 -0.5 190,572 - GFF4217 0.67 +0.8 190,572 - GFF4217 0.67 -0.3 190,613 + GFF4217 0.73 -0.9 190,613 + GFF4217 0.73 +1.0 190,613 + GFF4217 0.73 -0.0 190,613 + GFF4217 0.73 +0.4 190,613 + GFF4217 0.73 +0.6 190,613 + GFF4217 0.73 +0.1 190,614 - GFF4217 0.73 +0.2 190,614 - GFF4217 0.73 +0.6 190,614 - GFF4217 0.73 +0.2 190,643 - GFF4217 0.78 +1.1 190,667 + GFF4217 0.82 -1.3 190,667 + GFF4217 0.82 -0.5 190,667 + GFF4217 0.82 +0.7 190,668 - GFF4217 0.82 -0.3 190,756 + +0.4 190,887 + GFF4218 0.18 +0.7 190,888 - GFF4218 0.18 +0.1 190,891 - GFF4218 0.18 -0.4 190,903 - GFF4218 0.20 +0.0 190,903 - GFF4218 0.20 +1.0 190,918 - GFF4218 0.22 -0.5 191,032 - GFF4218 0.39 -0.1 191,039 + GFF4218 0.41 +1.0 191,040 - GFF4218 0.41 -0.3 191,040 - GFF4218 0.41 -0.6 191,130 + GFF4218 0.54 -0.0
Or see this region's nucleotide sequence