Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF419 and GFF420 are separated by 24 nucleotides GFF420 and GFF421 are separated by 65 nucleotides GFF421 and GFF422 are separated by 87 nucleotides
GFF419 - Bifunctional (p)ppGpp synthase/hydrolase SpoT, at 459,562 to 461,667
GFF419
GFF420 - 2-iminobutanoate/2-iminopropanoate deaminase, at 461,692 to 462,072
GFF420
GFF421 - hypothetical protein, at 462,138 to 462,878
GFF421
GFF422 - hypothetical protein, at 462,966 to 463,820
GFF422
Position (kb) 461
462
463 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 460.991 kb on + strand, within GFF419 at 460.991 kb on + strand, within GFF419 at 460.991 kb on + strand, within GFF419 at 461.674 kb on + strand at 461.674 kb on + strand at 461.674 kb on + strand at 461.675 kb on - strand at 461.675 kb on - strand at 461.677 kb on + strand at 461.677 kb on + strand at 461.677 kb on + strand at 461.677 kb on + strand at 461.677 kb on + strand at 461.677 kb on + strand at 461.677 kb on + strand at 461.677 kb on + strand at 461.677 kb on + strand at 461.677 kb on + strand at 461.678 kb on - strand at 461.678 kb on - strand at 461.678 kb on - strand at 461.689 kb on + strand at 461.689 kb on + strand at 461.689 kb on + strand at 461.689 kb on + strand at 461.689 kb on + strand at 461.689 kb on + strand at 461.690 kb on - strand at 461.690 kb on - strand at 461.690 kb on - strand at 461.690 kb on - strand at 461.743 kb on + strand, within GFF420 at 461.744 kb on - strand, within GFF420 at 461.744 kb on - strand, within GFF420 at 461.776 kb on + strand, within GFF420 at 461.776 kb on + strand, within GFF420 at 461.776 kb on + strand, within GFF420 at 461.776 kb on + strand, within GFF420 at 461.777 kb on - strand, within GFF420 at 461.777 kb on - strand, within GFF420 at 461.777 kb on - strand, within GFF420 at 461.777 kb on - strand, within GFF420 at 461.777 kb on - strand, within GFF420 at 461.777 kb on - strand, within GFF420 at 461.974 kb on + strand, within GFF420 at 461.975 kb on - strand, within GFF420 at 461.989 kb on + strand, within GFF420 at 462.291 kb on + strand, within GFF421 at 462.292 kb on - strand, within GFF421 at 462.414 kb on + strand, within GFF421 at 462.414 kb on + strand, within GFF421 at 462.414 kb on + strand, within GFF421 at 462.414 kb on + strand, within GFF421 at 462.414 kb on + strand, within GFF421 at 462.415 kb on - strand, within GFF421 at 462.415 kb on - strand, within GFF421 at 462.561 kb on + strand, within GFF421 at 462.561 kb on + strand, within GFF421 at 462.562 kb on - strand, within GFF421 at 462.570 kb on + strand, within GFF421 at 462.570 kb on + strand, within GFF421 at 462.571 kb on - strand, within GFF421 at 462.672 kb on + strand, within GFF421 at 462.673 kb on - strand, within GFF421 at 462.876 kb on + strand at 462.912 kb on + strand at 462.912 kb on + strand at 462.912 kb on + strand at 462.912 kb on + strand at 462.912 kb on + strand at 462.912 kb on + strand at 462.913 kb on - strand at 462.913 kb on - strand at 462.935 kb on - strand at 462.991 kb on + strand at 462.991 kb on + strand at 462.991 kb on + strand at 462.992 kb on - strand at 463.012 kb on + strand at 463.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 460,991 + GFF419 0.68 -1.6 460,991 + GFF419 0.68 -1.0 460,991 + GFF419 0.68 +0.8 461,674 + +0.4 461,674 + +1.7 461,674 + -2.0 461,675 - +1.1 461,675 - -0.9 461,677 + -0.4 461,677 + +0.2 461,677 + +0.1 461,677 + -0.5 461,677 + -0.2 461,677 + -0.6 461,677 + -0.4 461,677 + -0.4 461,677 + -0.1 461,677 + +0.8 461,678 - -1.2 461,678 - -0.5 461,678 - -0.5 461,689 + -1.2 461,689 + -1.0 461,689 + -0.6 461,689 + -2.1 461,689 + +1.4 461,689 + -0.6 461,690 - -1.2 461,690 - -2.0 461,690 - -2.9 461,690 - -0.6 461,743 + GFF420 0.13 -1.0 461,744 - GFF420 0.14 -2.2 461,744 - GFF420 0.14 +1.6 461,776 + GFF420 0.22 +0.0 461,776 + GFF420 0.22 -1.2 461,776 + GFF420 0.22 -1.7 461,776 + GFF420 0.22 +0.6 461,777 - GFF420 0.22 -2.1 461,777 - GFF420 0.22 +0.1 461,777 - GFF420 0.22 -1.4 461,777 - GFF420 0.22 -1.4 461,777 - GFF420 0.22 +0.4 461,777 - GFF420 0.22 -2.2 461,974 + GFF420 0.74 -2.4 461,975 - GFF420 0.74 -1.3 461,989 + GFF420 0.78 -0.9 462,291 + GFF421 0.21 +0.2 462,292 - GFF421 0.21 +0.1 462,414 + GFF421 0.37 -0.2 462,414 + GFF421 0.37 -0.4 462,414 + GFF421 0.37 -1.7 462,414 + GFF421 0.37 -0.1 462,414 + GFF421 0.37 +0.8 462,415 - GFF421 0.37 -0.7 462,415 - GFF421 0.37 +0.3 462,561 + GFF421 0.57 -1.0 462,561 + GFF421 0.57 +0.9 462,562 - GFF421 0.57 -0.9 462,570 + GFF421 0.58 -0.1 462,570 + GFF421 0.58 +0.3 462,571 - GFF421 0.58 +0.1 462,672 + GFF421 0.72 -0.0 462,673 - GFF421 0.72 -0.4 462,876 + +0.9 462,912 + -0.4 462,912 + +0.3 462,912 + -1.4 462,912 + -0.8 462,912 + -0.2 462,912 + +0.6 462,913 - -0.9 462,913 - +0.0 462,935 - +0.0 462,991 + -0.2 462,991 + -0.6 462,991 + +0.3 462,992 - -0.6 463,012 + -0.5 463,013 - +0.0
Or see this region's nucleotide sequence