Strain Fitness in Pseudomonas sp. DMC3 around GFF4097

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4095 and GFF4096 are separated by 9 nucleotidesGFF4096 and GFF4097 are separated by 103 nucleotidesGFF4097 and GFF4098 are separated by 0 nucleotidesGFF4098 and GFF4099 overlap by 1 nucleotides GFF4095 - Imidazole glycerol phosphate synthase subunit HisF, at 51,181 to 51,951 GFF4095 GFF4096 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino] imidazole-4-carboxamide isomerase, at 51,961 to 52,698 GFF4096 GFF4097 - hypothetical protein, at 52,802 to 53,062 GFF4097 GFF4098 - Imidazole glycerol phosphate synthase subunit HisH, at 53,063 to 53,701 GFF4098 GFF4099 - Histidine biosynthesis bifunctional protein HisB, at 53,701 to 54,294 GFF4099 Position (kb) 52 53 54Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 51.807 kb on + strand, within GFF4095at 51.807 kb on + strand, within GFF4095at 51.808 kb on - strand, within GFF4095at 51.808 kb on - strand, within GFF4095at 51.972 kb on - strandat 52.019 kb on + strandat 52.020 kb on - strandat 52.020 kb on - strandat 52.095 kb on + strand, within GFF4096at 52.159 kb on + strand, within GFF4096at 52.160 kb on - strand, within GFF4096at 52.400 kb on + strand, within GFF4096at 52.400 kb on + strand, within GFF4096at 52.421 kb on + strand, within GFF4096at 52.421 kb on + strand, within GFF4096at 52.422 kb on - strand, within GFF4096at 52.422 kb on - strand, within GFF4096at 52.422 kb on - strand, within GFF4096at 52.654 kb on + strandat 52.655 kb on - strandat 52.655 kb on - strandat 52.738 kb on + strandat 52.764 kb on - strandat 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.891 kb on - strand, within GFF4097at 52.891 kb on - strand, within GFF4097at 52.891 kb on - strand, within GFF4097at 52.891 kb on - strand, within GFF4097at 52.893 kb on + strand, within GFF4097at 52.894 kb on - strand, within GFF4097at 52.894 kb on - strand, within GFF4097at 52.894 kb on - strand, within GFF4097at 53.064 kb on + strandat 53.065 kb on - strandat 53.065 kb on - strandat 53.191 kb on - strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.238 kb on + strand, within GFF4098at 53.238 kb on + strand, within GFF4098at 53.238 kb on + strand, within GFF4098at 53.238 kb on + strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.253 kb on + strand, within GFF4098at 53.254 kb on - strand, within GFF4098at 53.568 kb on - strand, within GFF4098at 53.568 kb on - strand, within GFF4098at 53.702 kb on + strandat 53.703 kb on - strandat 53.927 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.006 kb on - strand, within GFF4099at 54.006 kb on - strand, within GFF4099at 54.006 kb on - strand, within GFF4099at 54.006 kb on - strand, within GFF4099at 54.006 kb on - strand, within GFF4099

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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51,807 + GFF4095 0.81 -3.2
51,807 + GFF4095 0.81 -2.5
51,808 - GFF4095 0.81 -2.9
51,808 - GFF4095 0.81 -0.1
51,972 - +0.8
52,019 + -3.2
52,020 - -3.4
52,020 - -1.4
52,095 + GFF4096 0.18 -2.7
52,159 + GFF4096 0.27 -1.9
52,160 - GFF4096 0.27 -0.4
52,400 + GFF4096 0.59 -2.6
52,400 + GFF4096 0.59 -1.0
52,421 + GFF4096 0.62 -2.8
52,421 + GFF4096 0.62 -4.4
52,422 - GFF4096 0.62 -2.1
52,422 - GFF4096 0.62 -2.0
52,422 - GFF4096 0.62 -3.4
52,654 + -3.2
52,655 - -3.3
52,655 - -1.0
52,738 + -3.0
52,764 - +0.7
52,890 + GFF4097 0.34 -1.7
52,890 + GFF4097 0.34 -1.4
52,890 + GFF4097 0.34 -0.8
52,890 + GFF4097 0.34 -2.0
52,890 + GFF4097 0.34 -1.1
52,890 + GFF4097 0.34 -1.9
52,890 + GFF4097 0.34 -1.9
52,891 - GFF4097 0.34 -0.6
52,891 - GFF4097 0.34 -1.2
52,891 - GFF4097 0.34 -0.5
52,891 - GFF4097 0.34 -0.0
52,893 + GFF4097 0.35 -2.5
52,894 - GFF4097 0.35 +0.7
52,894 - GFF4097 0.35 +0.5
52,894 - GFF4097 0.35 -1.6
53,064 + -0.4
53,065 - +0.8
53,065 - +0.1
53,191 - GFF4098 0.20 -2.0
53,235 + GFF4098 0.27 -4.0
53,235 + GFF4098 0.27 -3.1
53,235 + GFF4098 0.27 -3.6
53,235 + GFF4098 0.27 -2.1
53,235 + GFF4098 0.27 -3.0
53,235 + GFF4098 0.27 -3.5
53,235 + GFF4098 0.27 -1.9
53,236 - GFF4098 0.27 -3.4
53,236 - GFF4098 0.27 -0.7
53,236 - GFF4098 0.27 -3.3
53,236 - GFF4098 0.27 -3.5
53,236 - GFF4098 0.27 -1.2
53,236 - GFF4098 0.27 -1.2
53,236 - GFF4098 0.27 -2.4
53,236 - GFF4098 0.27 -2.0
53,238 + GFF4098 0.27 -1.7
53,238 + GFF4098 0.27 -3.6
53,238 + GFF4098 0.27 -2.2
53,238 + GFF4098 0.27 -1.0
53,239 - GFF4098 0.28 -1.0
53,239 - GFF4098 0.28 -2.3
53,239 - GFF4098 0.28 -4.2
53,239 - GFF4098 0.28 -3.6
53,239 - GFF4098 0.28 -2.3
53,253 + GFF4098 0.30 -3.3
53,254 - GFF4098 0.30 -2.1
53,568 - GFF4098 0.79 -2.2
53,568 - GFF4098 0.79 -2.4
53,702 + -1.7
53,703 - -0.0
53,927 + GFF4099 0.38 -1.7
54,005 + GFF4099 0.51 -3.7
54,005 + GFF4099 0.51 -3.8
54,005 + GFF4099 0.51 -2.8
54,005 + GFF4099 0.51 -2.6
54,005 + GFF4099 0.51 -2.5
54,005 + GFF4099 0.51 -2.5
54,006 - GFF4099 0.51 -1.0
54,006 - GFF4099 0.51 -3.8
54,006 - GFF4099 0.51 -2.1
54,006 - GFF4099 0.51 -2.2
54,006 - GFF4099 0.51 -3.9

Or see this region's nucleotide sequence