Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF407 and GFF408 are separated by 208 nucleotides GFF408 and GFF409 are separated by 18 nucleotides GFF409 and GFF410 overlap by 14 nucleotides GFF410 and GFF411 are separated by 141 nucleotides
GFF407 - Acetylglutamate kinase, at 450,594 to 451,499
GFF407
GFF408 - hypothetical protein, at 451,708 to 451,938
GFF408
GFF409 - hypothetical protein, at 451,957 to 452,529
GFF409
GFF410 - hypothetical protein, at 452,516 to 452,899
GFF410
GFF411 - Orotate phosphoribosyltransferase, at 453,041 to 453,685
GFF411
Position (kb) 451
452
453 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 451.173 kb on + strand, within GFF407 at 451.173 kb on + strand, within GFF407 at 451.173 kb on + strand, within GFF407 at 451.173 kb on + strand, within GFF407 at 451.173 kb on + strand, within GFF407 at 451.174 kb on - strand, within GFF407 at 451.174 kb on - strand, within GFF407 at 451.339 kb on - strand, within GFF407 at 451.346 kb on + strand, within GFF407 at 451.346 kb on + strand, within GFF407 at 451.394 kb on - strand, within GFF407 at 451.394 kb on - strand, within GFF407 at 451.397 kb on + strand, within GFF407 at 451.397 kb on + strand, within GFF407 at 451.398 kb on - strand, within GFF407 at 451.504 kb on + strand at 451.508 kb on - strand at 451.508 kb on - strand at 451.508 kb on - strand at 451.508 kb on - strand at 451.544 kb on + strand at 451.578 kb on + strand at 451.578 kb on + strand at 451.578 kb on + strand at 451.664 kb on + strand at 451.664 kb on + strand at 451.664 kb on + strand at 451.674 kb on + strand at 451.674 kb on + strand at 451.675 kb on - strand at 451.675 kb on - strand at 451.720 kb on + strand at 451.720 kb on + strand at 451.720 kb on + strand at 451.720 kb on + strand at 451.721 kb on - strand at 451.721 kb on - strand at 451.721 kb on - strand at 451.756 kb on + strand, within GFF408 at 451.757 kb on - strand, within GFF408 at 451.757 kb on - strand, within GFF408 at 451.757 kb on - strand, within GFF408 at 451.757 kb on - strand, within GFF408 at 451.783 kb on + strand, within GFF408 at 451.937 kb on - strand at 452.092 kb on + strand, within GFF409 at 452.161 kb on + strand, within GFF409 at 452.161 kb on + strand, within GFF409 at 452.162 kb on - strand, within GFF409 at 452.177 kb on - strand, within GFF409 at 452.177 kb on - strand, within GFF409 at 452.726 kb on + strand, within GFF410 at 452.727 kb on - strand, within GFF410 at 452.731 kb on + strand, within GFF410 at 452.805 kb on + strand, within GFF410 at 452.805 kb on + strand, within GFF410 at 452.805 kb on + strand, within GFF410 at 452.805 kb on + strand, within GFF410 at 452.806 kb on - strand, within GFF410 at 452.807 kb on + strand, within GFF410 at 452.807 kb on + strand, within GFF410 at 452.807 kb on + strand, within GFF410 at 452.808 kb on - strand, within GFF410 at 452.808 kb on - strand, within GFF410 at 452.808 kb on - strand, within GFF410 at 452.808 kb on - strand, within GFF410 at 452.808 kb on - strand, within GFF410 at 452.808 kb on - strand, within GFF410 at 452.808 kb on - strand, within GFF410 at 452.979 kb on + strand at 452.979 kb on + strand at 452.980 kb on - strand at 452.980 kb on - strand at 453.308 kb on + strand, within GFF411 at 453.308 kb on + strand, within GFF411 at 453.309 kb on - strand, within GFF411 at 453.469 kb on + strand, within GFF411 at 453.469 kb on + strand, within GFF411 at 453.469 kb on + strand, within GFF411 at 453.470 kb on - strand, within GFF411 at 453.471 kb on + strand, within GFF411 at 453.471 kb on + strand, within GFF411 at 453.472 kb on - strand, within GFF411
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 451,173 + GFF407 0.64 -2.7 451,173 + GFF407 0.64 -4.5 451,173 + GFF407 0.64 -0.4 451,173 + GFF407 0.64 -1.4 451,173 + GFF407 0.64 -2.7 451,174 - GFF407 0.64 -3.3 451,174 - GFF407 0.64 -2.1 451,339 - GFF407 0.82 -1.9 451,346 + GFF407 0.83 -2.7 451,346 + GFF407 0.83 -2.3 451,394 - GFF407 0.88 -2.2 451,394 - GFF407 0.88 -2.8 451,397 + GFF407 0.89 -1.4 451,397 + GFF407 0.89 -2.2 451,398 - GFF407 0.89 -1.0 451,504 + -0.3 451,508 - -0.6 451,508 - -0.5 451,508 - -0.0 451,508 - -0.3 451,544 + -0.4 451,578 + -1.0 451,578 + +0.6 451,578 + -0.3 451,664 + -0.6 451,664 + -0.4 451,664 + +0.5 451,674 + +1.0 451,674 + -0.3 451,675 - -1.5 451,675 - +0.6 451,720 + -0.1 451,720 + -0.6 451,720 + -0.2 451,720 + -0.3 451,721 - -0.1 451,721 - +0.4 451,721 - -0.2 451,756 + GFF408 0.21 +0.1 451,757 - GFF408 0.21 -0.4 451,757 - GFF408 0.21 -0.6 451,757 - GFF408 0.21 -0.6 451,757 - GFF408 0.21 -0.8 451,783 + GFF408 0.32 +0.8 451,937 - -0.7 452,092 + GFF409 0.24 +1.4 452,161 + GFF409 0.36 -0.1 452,161 + GFF409 0.36 +0.7 452,162 - GFF409 0.36 +0.4 452,177 - GFF409 0.38 +0.6 452,177 - GFF409 0.38 -1.9 452,726 + GFF410 0.55 +0.7 452,727 - GFF410 0.55 +1.0 452,731 + GFF410 0.56 +0.6 452,805 + GFF410 0.75 +0.1 452,805 + GFF410 0.75 -0.7 452,805 + GFF410 0.75 +0.3 452,805 + GFF410 0.75 -0.3 452,806 - GFF410 0.76 +0.0 452,807 + GFF410 0.76 -0.2 452,807 + GFF410 0.76 -0.8 452,807 + GFF410 0.76 +0.5 452,808 - GFF410 0.76 +0.1 452,808 - GFF410 0.76 -0.5 452,808 - GFF410 0.76 +0.7 452,808 - GFF410 0.76 +1.6 452,808 - GFF410 0.76 -1.1 452,808 - GFF410 0.76 +0.5 452,808 - GFF410 0.76 +0.3 452,979 + +1.0 452,979 + -0.8 452,980 - -1.0 452,980 - -1.3 453,308 + GFF411 0.41 -0.7 453,308 + GFF411 0.41 -0.4 453,309 - GFF411 0.42 -0.4 453,469 + GFF411 0.66 -0.7 453,469 + GFF411 0.66 -0.4 453,469 + GFF411 0.66 -1.0 453,470 - GFF411 0.67 -0.7 453,471 + GFF411 0.67 -1.7 453,471 + GFF411 0.67 -0.4 453,472 - GFF411 0.67 -1.7
Or see this region's nucleotide sequence