Strain Fitness in Pseudomonas sp. DMC3 around GFF3922

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3920 and GFF3921 are separated by 271 nucleotidesGFF3921 and GFF3922 are separated by 35 nucleotidesGFF3922 and GFF3923 are separated by 310 nucleotides GFF3920 - hypothetical protein, at 174,678 to 175,439 GFF3920 GFF3921 - hypothetical protein, at 175,711 to 176,190 GFF3921 GFF3922 - DNA polymerase III PolC-type, at 176,226 to 176,831 GFF3922 GFF3923 - putative inner membrane transporter YedA, at 177,142 to 178,077 GFF3923 Position (kb) 176 177Strain fitness (log2 ratio) -2 -1 0 1at 175.389 kb on + strandat 175.463 kb on + strandat 175.463 kb on + strandat 175.463 kb on + strandat 175.463 kb on + strandat 175.464 kb on - strandat 175.464 kb on - strandat 175.464 kb on - strandat 175.464 kb on - strandat 175.464 kb on - strandat 175.464 kb on - strandat 175.464 kb on - strandat 175.464 kb on - strandat 175.464 kb on - strandat 175.464 kb on - strandat 175.464 kb on - strandat 175.516 kb on + strandat 175.557 kb on - strandat 175.557 kb on - strandat 175.612 kb on + strandat 175.613 kb on - strandat 175.641 kb on + strandat 175.641 kb on + strandat 175.641 kb on + strandat 175.642 kb on - strandat 175.750 kb on + strandat 175.750 kb on + strandat 175.750 kb on + strandat 175.751 kb on - strandat 175.751 kb on - strandat 175.753 kb on + strandat 175.753 kb on + strandat 175.754 kb on - strandat 175.754 kb on - strandat 175.754 kb on - strandat 175.754 kb on - strandat 175.771 kb on + strand, within GFF3921at 175.772 kb on - strand, within GFF3921at 175.789 kb on + strand, within GFF3921at 175.840 kb on + strand, within GFF3921at 175.840 kb on + strand, within GFF3921at 175.840 kb on + strand, within GFF3921at 175.841 kb on - strand, within GFF3921at 175.930 kb on + strand, within GFF3921at 175.930 kb on + strand, within GFF3921at 175.931 kb on - strand, within GFF3921at 175.931 kb on - strand, within GFF3921at 175.931 kb on - strand, within GFF3921at 175.931 kb on - strand, within GFF3921at 175.931 kb on - strand, within GFF3921at 175.931 kb on - strand, within GFF3921at 176.153 kb on - strandat 176.188 kb on + strandat 176.189 kb on - strandat 176.208 kb on + strandat 176.474 kb on + strand, within GFF3922at 176.475 kb on - strand, within GFF3922at 177.074 kb on + strandat 177.074 kb on + strandat 177.080 kb on - strandat 177.101 kb on + strandat 177.101 kb on + strandat 177.101 kb on + strandat 177.102 kb on - strandat 177.196 kb on + strandat 177.196 kb on + strandat 177.196 kb on + strandat 177.196 kb on + strandat 177.197 kb on - strandat 177.197 kb on - strandat 177.197 kb on - strandat 177.197 kb on - strandat 177.197 kb on - strandat 177.217 kb on + strandat 177.218 kb on - strandat 177.301 kb on + strand, within GFF3923at 177.301 kb on + strand, within GFF3923at 177.301 kb on + strand, within GFF3923at 177.301 kb on + strand, within GFF3923at 177.301 kb on + strand, within GFF3923at 177.302 kb on - strand, within GFF3923at 177.302 kb on - strand, within GFF3923at 177.302 kb on - strand, within GFF3923at 177.302 kb on - strand, within GFF3923at 177.302 kb on - strand, within GFF3923at 177.302 kb on - strand, within GFF3923at 177.302 kb on - strand, within GFF3923at 177.658 kb on + strand, within GFF3923at 177.658 kb on + strand, within GFF3923at 177.658 kb on + strand, within GFF3923at 177.659 kb on - strand, within GFF3923at 177.659 kb on - strand, within GFF3923at 177.659 kb on - strand, within GFF3923at 177.796 kb on + strand, within GFF3923

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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175,389 + -0.2
175,463 + -1.3
175,463 + -0.8
175,463 + +0.8
175,463 + +1.5
175,464 - -0.5
175,464 - +0.5
175,464 - +0.5
175,464 - -0.3
175,464 - +0.7
175,464 - -1.0
175,464 - +0.9
175,464 - +1.1
175,464 - +1.0
175,464 - +1.5
175,464 - +0.7
175,516 + -0.4
175,557 - +0.4
175,557 - +1.2
175,612 + +0.1
175,613 - +0.6
175,641 + -0.3
175,641 + -0.0
175,641 + -0.8
175,642 - -0.4
175,750 + -1.1
175,750 + +1.0
175,750 + -0.4
175,751 - -0.0
175,751 - +0.3
175,753 + +0.7
175,753 + -0.4
175,754 - +0.7
175,754 - +0.2
175,754 - -0.6
175,754 - -0.2
175,771 + GFF3921 0.12 -0.3
175,772 - GFF3921 0.13 +0.1
175,789 + GFF3921 0.16 -0.7
175,840 + GFF3921 0.27 +0.9
175,840 + GFF3921 0.27 -0.6
175,840 + GFF3921 0.27 -0.4
175,841 - GFF3921 0.27 +0.1
175,930 + GFF3921 0.46 +0.9
175,930 + GFF3921 0.46 -0.2
175,931 - GFF3921 0.46 +0.4
175,931 - GFF3921 0.46 -0.0
175,931 - GFF3921 0.46 -0.5
175,931 - GFF3921 0.46 -0.1
175,931 - GFF3921 0.46 -0.6
175,931 - GFF3921 0.46 +0.7
176,153 - +0.3
176,188 + -0.2
176,189 - -1.2
176,208 + -0.2
176,474 + GFF3922 0.41 -0.2
176,475 - GFF3922 0.41 +1.0
177,074 + -1.0
177,074 + -0.5
177,080 - -0.7
177,101 + -0.5
177,101 + -0.5
177,101 + -0.7
177,102 - -0.8
177,196 + +0.1
177,196 + +0.6
177,196 + +0.6
177,196 + -0.1
177,197 - +0.7
177,197 - -0.5
177,197 - -0.5
177,197 - +0.7
177,197 - -0.3
177,217 + +0.2
177,218 - +0.0
177,301 + GFF3923 0.17 +1.1
177,301 + GFF3923 0.17 +0.0
177,301 + GFF3923 0.17 -1.3
177,301 + GFF3923 0.17 +1.1
177,301 + GFF3923 0.17 -1.5
177,302 - GFF3923 0.17 -2.1
177,302 - GFF3923 0.17 +0.5
177,302 - GFF3923 0.17 -0.3
177,302 - GFF3923 0.17 +0.3
177,302 - GFF3923 0.17 +0.9
177,302 - GFF3923 0.17 -1.3
177,302 - GFF3923 0.17 +0.2
177,658 + GFF3923 0.55 -0.2
177,658 + GFF3923 0.55 +1.1
177,658 + GFF3923 0.55 +0.8
177,659 - GFF3923 0.55 -0.5
177,659 - GFF3923 0.55 -0.8
177,659 - GFF3923 0.55 +0.1
177,796 + GFF3923 0.70 -1.3

Or see this region's nucleotide sequence