Strain Fitness in Pseudomonas sp. DMC3 around GFF3876

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3875 and GFF3876 are separated by 177 nucleotidesGFF3876 and GFF3877 overlap by 32 nucleotidesGFF3877 and GFF3878 are separated by 72 nucleotides GFF3875 - Putative 3-methyladenine DNA glycosylase, at 127,535 to 128,260 GFF3875 GFF3876 - Gamma-glutamyl phosphate reductase, at 128,438 to 129,709 GFF3876 GFF3877 - putative nicotinate-nucleotide adenylyltransferase, at 129,678 to 130,400 GFF3877 GFF3878 - Ribosomal silencing factor RsfS, at 130,473 to 130,967 GFF3878 Position (kb) 128 129 130Strain fitness (log2 ratio) -2 -1 0 1at 127.476 kb on + strandat 127.476 kb on + strandat 127.477 kb on - strandat 127.477 kb on - strandat 127.477 kb on - strandat 127.477 kb on - strandat 127.576 kb on + strandat 127.576 kb on + strandat 127.576 kb on + strandat 127.576 kb on + strandat 127.577 kb on - strandat 127.635 kb on + strand, within GFF3875at 127.636 kb on - strand, within GFF3875at 127.636 kb on - strand, within GFF3875at 127.636 kb on - strand, within GFF3875at 127.656 kb on + strand, within GFF3875at 127.657 kb on - strand, within GFF3875at 127.998 kb on + strand, within GFF3875at 127.998 kb on + strand, within GFF3875at 127.998 kb on + strand, within GFF3875at 127.999 kb on - strand, within GFF3875at 127.999 kb on - strand, within GFF3875at 127.999 kb on - strand, within GFF3875at 127.999 kb on - strand, within GFF3875at 127.999 kb on - strand, within GFF3875at 128.001 kb on + strand, within GFF3875at 128.001 kb on + strand, within GFF3875at 128.001 kb on + strand, within GFF3875at 128.001 kb on + strand, within GFF3875at 128.001 kb on + strand, within GFF3875at 128.001 kb on + strand, within GFF3875at 128.001 kb on + strand, within GFF3875at 128.001 kb on + strand, within GFF3875at 128.001 kb on + strand, within GFF3875at 128.001 kb on + strand, within GFF3875at 128.001 kb on + strand, within GFF3875at 128.002 kb on - strand, within GFF3875at 128.002 kb on - strand, within GFF3875at 128.002 kb on - strand, within GFF3875at 128.002 kb on - strand, within GFF3875at 128.002 kb on - strand, within GFF3875at 128.002 kb on - strand, within GFF3875at 128.002 kb on - strand, within GFF3875at 128.002 kb on - strand, within GFF3875at 128.002 kb on - strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.005 kb on + strand, within GFF3875at 128.006 kb on - strand, within GFF3875at 128.006 kb on - strand, within GFF3875at 128.006 kb on - strand, within GFF3875at 128.006 kb on - strand, within GFF3875at 128.006 kb on - strand, within GFF3875at 128.006 kb on - strand, within GFF3875at 128.006 kb on - strand, within GFF3875at 128.006 kb on - strand, within GFF3875at 128.006 kb on - strand, within GFF3875at 128.006 kb on - strand, within GFF3875at 128.006 kb on - strand, within GFF3875at 128.006 kb on - strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.007 kb on + strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.008 kb on - strand, within GFF3875at 128.009 kb on + strand, within GFF3875at 128.038 kb on + strand, within GFF3875at 128.053 kb on - strand, within GFF3875at 128.088 kb on + strand, within GFF3875at 128.089 kb on - strand, within GFF3875at 128.089 kb on - strand, within GFF3875at 128.089 kb on - strand, within GFF3875at 128.091 kb on + strand, within GFF3875at 128.092 kb on - strand, within GFF3875at 128.092 kb on - strand, within GFF3875at 128.092 kb on - strand, within GFF3875at 128.275 kb on - strandat 128.301 kb on - strandat 128.301 kb on - strandat 128.315 kb on + strandat 128.316 kb on - strandat 128.316 kb on - strandat 128.316 kb on - strandat 128.319 kb on + strandat 128.319 kb on + strandat 128.319 kb on + strandat 128.319 kb on + strandat 128.319 kb on + strandat 128.319 kb on + strandat 128.320 kb on - strandat 128.320 kb on - strandat 128.320 kb on - strandat 128.320 kb on - strandat 128.320 kb on - strandat 128.377 kb on - strandat 128.396 kb on + strandat 128.396 kb on + strandat 128.396 kb on + strandat 128.396 kb on + strandat 128.396 kb on + strandat 128.396 kb on + strandat 128.396 kb on + strandat 128.397 kb on - strandat 128.397 kb on - strandat 128.397 kb on - strandat 128.397 kb on - strandat 128.397 kb on - strandat 128.397 kb on - strandat 128.397 kb on - strandat 128.397 kb on - strandat 128.397 kb on - strandat 128.397 kb on - strandat 128.398 kb on + strandat 128.398 kb on + strandat 128.398 kb on + strandat 128.398 kb on + strandat 128.459 kb on + strandat 128.813 kb on + strand, within GFF3876at 128.813 kb on + strand, within GFF3876at 128.813 kb on + strand, within GFF3876at 128.813 kb on + strand, within GFF3876at 129.035 kb on + strand, within GFF3876at 129.035 kb on + strand, within GFF3876at 129.127 kb on + strand, within GFF3876at 129.140 kb on + strand, within GFF3876at 129.140 kb on + strand, within GFF3876at 129.200 kb on + strand, within GFF3876at 129.610 kb on + strandat 129.662 kb on + strandat 129.662 kb on + strandat 129.662 kb on + strandat 130.420 kb on + strandat 130.420 kb on + strandat 130.450 kb on + strandat 130.450 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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127,476 + -0.3
127,476 + +0.8
127,477 - +0.5
127,477 - -0.8
127,477 - -0.7
127,477 - +0.2
127,576 + +0.4
127,576 + -0.7
127,576 + -0.2
127,576 + -0.5
127,577 - +0.5
127,635 + GFF3875 0.14 +0.8
127,636 - GFF3875 0.14 -1.0
127,636 - GFF3875 0.14 +0.1
127,636 - GFF3875 0.14 -0.3
127,656 + GFF3875 0.17 +0.4
127,657 - GFF3875 0.17 -1.0
127,998 + GFF3875 0.64 +0.5
127,998 + GFF3875 0.64 -1.0
127,998 + GFF3875 0.64 -1.3
127,999 - GFF3875 0.64 +0.2
127,999 - GFF3875 0.64 +0.1
127,999 - GFF3875 0.64 -1.1
127,999 - GFF3875 0.64 -1.0
127,999 - GFF3875 0.64 -0.1
128,001 + GFF3875 0.64 -1.0
128,001 + GFF3875 0.64 +1.5
128,001 + GFF3875 0.64 +0.2
128,001 + GFF3875 0.64 +0.3
128,001 + GFF3875 0.64 +0.2
128,001 + GFF3875 0.64 -0.4
128,001 + GFF3875 0.64 -0.8
128,001 + GFF3875 0.64 -0.1
128,001 + GFF3875 0.64 +0.3
128,001 + GFF3875 0.64 -1.5
128,001 + GFF3875 0.64 -0.5
128,002 - GFF3875 0.64 -0.7
128,002 - GFF3875 0.64 +0.4
128,002 - GFF3875 0.64 -0.4
128,002 - GFF3875 0.64 +1.1
128,002 - GFF3875 0.64 +0.1
128,002 - GFF3875 0.64 -0.1
128,002 - GFF3875 0.64 -0.6
128,002 - GFF3875 0.64 -0.5
128,002 - GFF3875 0.64 +1.2
128,005 + GFF3875 0.65 -1.0
128,005 + GFF3875 0.65 -1.5
128,005 + GFF3875 0.65 +1.4
128,005 + GFF3875 0.65 -0.4
128,005 + GFF3875 0.65 -0.4
128,005 + GFF3875 0.65 -1.2
128,005 + GFF3875 0.65 +0.2
128,005 + GFF3875 0.65 +0.5
128,005 + GFF3875 0.65 -1.3
128,005 + GFF3875 0.65 -0.9
128,005 + GFF3875 0.65 +0.9
128,005 + GFF3875 0.65 -0.2
128,005 + GFF3875 0.65 +0.6
128,005 + GFF3875 0.65 +0.2
128,005 + GFF3875 0.65 -0.0
128,005 + GFF3875 0.65 +0.2
128,006 - GFF3875 0.65 -0.4
128,006 - GFF3875 0.65 -0.5
128,006 - GFF3875 0.65 -0.9
128,006 - GFF3875 0.65 -2.0
128,006 - GFF3875 0.65 +0.1
128,006 - GFF3875 0.65 -0.3
128,006 - GFF3875 0.65 -0.1
128,006 - GFF3875 0.65 +0.1
128,006 - GFF3875 0.65 +0.3
128,006 - GFF3875 0.65 +0.5
128,006 - GFF3875 0.65 -0.1
128,006 - GFF3875 0.65 +0.1
128,007 + GFF3875 0.65 -0.1
128,007 + GFF3875 0.65 -1.2
128,007 + GFF3875 0.65 +0.3
128,007 + GFF3875 0.65 +0.1
128,007 + GFF3875 0.65 +0.7
128,007 + GFF3875 0.65 -0.0
128,007 + GFF3875 0.65 +0.4
128,007 + GFF3875 0.65 -1.3
128,007 + GFF3875 0.65 -0.2
128,007 + GFF3875 0.65 -0.8
128,007 + GFF3875 0.65 +0.3
128,007 + GFF3875 0.65 -1.0
128,007 + GFF3875 0.65 +0.3
128,007 + GFF3875 0.65 +1.2
128,007 + GFF3875 0.65 +0.8
128,007 + GFF3875 0.65 +0.5
128,007 + GFF3875 0.65 -0.1
128,007 + GFF3875 0.65 -0.6
128,007 + GFF3875 0.65 -0.5
128,007 + GFF3875 0.65 -0.6
128,007 + GFF3875 0.65 -0.2
128,007 + GFF3875 0.65 -0.6
128,008 - GFF3875 0.65 -0.5
128,008 - GFF3875 0.65 +1.7
128,008 - GFF3875 0.65 +0.7
128,008 - GFF3875 0.65 +0.4
128,008 - GFF3875 0.65 -0.1
128,008 - GFF3875 0.65 -0.3
128,008 - GFF3875 0.65 -0.4
128,008 - GFF3875 0.65 -1.6
128,008 - GFF3875 0.65 -0.8
128,008 - GFF3875 0.65 +0.1
128,008 - GFF3875 0.65 -0.4
128,008 - GFF3875 0.65 -0.4
128,008 - GFF3875 0.65 -0.4
128,008 - GFF3875 0.65 -0.4
128,008 - GFF3875 0.65 +0.6
128,009 + GFF3875 0.65 +0.5
128,038 + GFF3875 0.69 +0.3
128,053 - GFF3875 0.71 -0.5
128,088 + GFF3875 0.76 +1.3
128,089 - GFF3875 0.76 -0.9
128,089 - GFF3875 0.76 -0.8
128,089 - GFF3875 0.76 -0.9
128,091 + GFF3875 0.77 -0.2
128,092 - GFF3875 0.77 -0.3
128,092 - GFF3875 0.77 +0.8
128,092 - GFF3875 0.77 -1.1
128,275 - +0.0
128,301 - -0.4
128,301 - -0.2
128,315 + -0.9
128,316 - +0.0
128,316 - +0.4
128,316 - -1.1
128,319 + +0.4
128,319 + +0.2
128,319 + +0.8
128,319 + -0.3
128,319 + +0.2
128,319 + +0.7
128,320 - -0.1
128,320 - -0.3
128,320 - +0.2
128,320 - +0.1
128,320 - +0.9
128,377 - +0.3
128,396 + -0.0
128,396 + -1.1
128,396 + -0.8
128,396 + +0.0
128,396 + +0.3
128,396 + +0.9
128,396 + -0.5
128,397 - -0.3
128,397 - -0.2
128,397 - -0.2
128,397 - -0.8
128,397 - -0.3
128,397 - +0.3
128,397 - -0.2
128,397 - -0.1
128,397 - +0.9
128,397 - -0.1
128,398 + -0.0
128,398 + -0.4
128,398 + -0.1
128,398 + +1.6
128,459 + +0.5
128,813 + GFF3876 0.29 +0.7
128,813 + GFF3876 0.29 +0.9
128,813 + GFF3876 0.29 +0.9
128,813 + GFF3876 0.29 +0.4
129,035 + GFF3876 0.47 +1.2
129,035 + GFF3876 0.47 +1.5
129,127 + GFF3876 0.54 -2.6
129,140 + GFF3876 0.55 -0.8
129,140 + GFF3876 0.55 -1.6
129,200 + GFF3876 0.60 +0.6
129,610 + -1.3
129,662 + +1.0
129,662 + -1.7
129,662 + +0.4
130,420 + +0.2
130,420 + -1.0
130,450 + +0.4
130,450 + +0.9

Or see this region's nucleotide sequence