Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3660 and GFF3661 are separated by 132 nucleotides GFF3661 and GFF3662 are separated by 109 nucleotides
GFF3660 - hypothetical protein, at 249,736 to 253,494
GFF3660
GFF3661 - Twitching mobility protein, at 253,627 to 254,736
GFF3661
GFF3662 - Sensor histidine kinase RcsC, at 254,846 to 257,395
GFF3662
Position (kb) 253
254
255 Strain fitness (log2 ratio) -1
0
1
2 at 252.689 kb on + strand, within GFF3660 at 252.763 kb on + strand, within GFF3660 at 252.763 kb on + strand, within GFF3660 at 252.764 kb on - strand, within GFF3660 at 252.764 kb on - strand, within GFF3660 at 252.764 kb on - strand, within GFF3660 at 253.024 kb on + strand, within GFF3660 at 253.024 kb on + strand, within GFF3660 at 253.043 kb on - strand, within GFF3660 at 253.098 kb on + strand, within GFF3660 at 253.109 kb on + strand, within GFF3660 at 253.109 kb on + strand, within GFF3660 at 253.109 kb on + strand, within GFF3660 at 253.110 kb on - strand, within GFF3660 at 253.118 kb on + strand, within GFF3660 at 253.119 kb on - strand at 253.139 kb on - strand at 253.201 kb on - strand at 253.286 kb on + strand at 253.286 kb on + strand at 253.287 kb on - strand at 253.288 kb on + strand at 253.288 kb on + strand at 253.288 kb on + strand at 253.289 kb on - strand at 253.289 kb on - strand at 253.289 kb on - strand at 253.362 kb on - strand at 253.468 kb on + strand at 253.574 kb on - strand at 253.577 kb on + strand at 253.581 kb on - strand at 253.659 kb on + strand at 253.660 kb on - strand at 253.666 kb on - strand at 253.666 kb on - strand at 253.710 kb on + strand at 254.010 kb on + strand, within GFF3661 at 254.011 kb on - strand, within GFF3661 at 254.137 kb on + strand, within GFF3661 at 254.137 kb on + strand, within GFF3661 at 254.137 kb on + strand, within GFF3661 at 254.138 kb on - strand, within GFF3661 at 254.197 kb on + strand, within GFF3661 at 254.244 kb on + strand, within GFF3661 at 254.244 kb on + strand, within GFF3661 at 254.244 kb on + strand, within GFF3661 at 254.244 kb on + strand, within GFF3661 at 254.244 kb on + strand, within GFF3661 at 254.245 kb on - strand, within GFF3661 at 254.246 kb on + strand, within GFF3661 at 254.247 kb on - strand, within GFF3661 at 254.247 kb on - strand, within GFF3661 at 254.711 kb on - strand at 254.711 kb on - strand at 254.808 kb on + strand at 254.808 kb on + strand at 254.809 kb on - strand at 255.024 kb on - strand at 255.126 kb on + strand, within GFF3662 at 255.128 kb on + strand, within GFF3662 at 255.128 kb on + strand, within GFF3662 at 255.128 kb on + strand, within GFF3662 at 255.128 kb on + strand, within GFF3662 at 255.128 kb on + strand, within GFF3662 at 255.128 kb on + strand, within GFF3662 at 255.128 kb on + strand, within GFF3662 at 255.228 kb on - strand, within GFF3662 at 255.512 kb on + strand, within GFF3662 at 255.512 kb on + strand, within GFF3662 at 255.512 kb on + strand, within GFF3662 at 255.512 kb on + strand, within GFF3662 at 255.512 kb on + strand, within GFF3662 at 255.513 kb on - strand, within GFF3662 at 255.513 kb on - strand, within GFF3662 at 255.513 kb on - strand, within GFF3662 at 255.566 kb on + strand, within GFF3662 at 255.567 kb on - strand, within GFF3662 at 255.567 kb on - strand, within GFF3662 at 255.590 kb on + strand, within GFF3662 at 255.659 kb on + strand, within GFF3662 at 255.659 kb on + strand, within GFF3662 at 255.659 kb on + strand, within GFF3662 at 255.660 kb on - strand, within GFF3662 at 255.727 kb on + strand, within GFF3662
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 252,689 + GFF3660 0.79 +1.6 252,763 + GFF3660 0.81 +1.0 252,763 + GFF3660 0.81 -0.7 252,764 - GFF3660 0.81 +0.3 252,764 - GFF3660 0.81 -0.5 252,764 - GFF3660 0.81 +0.2 253,024 + GFF3660 0.87 -0.3 253,024 + GFF3660 0.87 -0.1 253,043 - GFF3660 0.88 +0.9 253,098 + GFF3660 0.89 -0.1 253,109 + GFF3660 0.90 -0.0 253,109 + GFF3660 0.90 +0.5 253,109 + GFF3660 0.90 +0.1 253,110 - GFF3660 0.90 +0.1 253,118 + GFF3660 0.90 +0.5 253,119 - -0.9 253,139 - -0.6 253,201 - +0.4 253,286 + +1.0 253,286 + -0.1 253,287 - -0.8 253,288 + -1.1 253,288 + +0.1 253,288 + -1.7 253,289 - +0.2 253,289 - -0.2 253,289 - -0.5 253,362 - -0.9 253,468 + +0.3 253,574 - -0.7 253,577 + +0.7 253,581 - +0.5 253,659 + +0.4 253,660 - -0.3 253,666 - +0.0 253,666 - +0.7 253,710 + +0.2 254,010 + GFF3661 0.35 -0.4 254,011 - GFF3661 0.35 +0.6 254,137 + GFF3661 0.46 +1.0 254,137 + GFF3661 0.46 -0.2 254,137 + GFF3661 0.46 +0.9 254,138 - GFF3661 0.46 +0.5 254,197 + GFF3661 0.51 -0.4 254,244 + GFF3661 0.56 +0.2 254,244 + GFF3661 0.56 +0.9 254,244 + GFF3661 0.56 +0.6 254,244 + GFF3661 0.56 -0.6 254,244 + GFF3661 0.56 +1.0 254,245 - GFF3661 0.56 -0.4 254,246 + GFF3661 0.56 +1.5 254,247 - GFF3661 0.56 -0.2 254,247 - GFF3661 0.56 +2.1 254,711 - -0.4 254,711 - +0.2 254,808 + +0.2 254,808 + -0.5 254,809 - +0.2 255,024 - -0.4 255,126 + GFF3662 0.11 -0.2 255,128 + GFF3662 0.11 +0.1 255,128 + GFF3662 0.11 -1.1 255,128 + GFF3662 0.11 -0.7 255,128 + GFF3662 0.11 -0.6 255,128 + GFF3662 0.11 +0.8 255,128 + GFF3662 0.11 +0.0 255,128 + GFF3662 0.11 +0.4 255,228 - GFF3662 0.15 +1.6 255,512 + GFF3662 0.26 -0.0 255,512 + GFF3662 0.26 -0.7 255,512 + GFF3662 0.26 +0.1 255,512 + GFF3662 0.26 +0.5 255,512 + GFF3662 0.26 -0.2 255,513 - GFF3662 0.26 -0.2 255,513 - GFF3662 0.26 +0.4 255,513 - GFF3662 0.26 +0.6 255,566 + GFF3662 0.28 -0.2 255,567 - GFF3662 0.28 -0.6 255,567 - GFF3662 0.28 +0.1 255,590 + GFF3662 0.29 +0.7 255,659 + GFF3662 0.32 -1.1 255,659 + GFF3662 0.32 +0.2 255,659 + GFF3662 0.32 +0.4 255,660 - GFF3662 0.32 -0.5 255,727 + GFF3662 0.35 -0.2
Or see this region's nucleotide sequence