Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3639 and GFF3640 are separated by 816 nucleotides GFF3640 and GFF3641 are separated by 210 nucleotides
GFF3639 - hypothetical protein, at 224,579 to 225,232
GFF3639
GFF3640 - hypothetical protein, at 226,049 to 226,294
GFF3640
GFF3641 - hypothetical protein, at 226,505 to 226,651
GFF3641
Position (kb) 226
227 Strain fitness (log2 ratio) -2
-1
0
1
2 at 225.104 kb on + strand, within GFF3639 at 225.117 kb on - strand, within GFF3639 at 225.117 kb on - strand, within GFF3639 at 225.117 kb on - strand, within GFF3639 at 225.117 kb on - strand, within GFF3639 at 225.120 kb on + strand, within GFF3639 at 225.121 kb on - strand, within GFF3639 at 225.166 kb on + strand, within GFF3639 at 225.178 kb on + strand at 225.202 kb on + strand at 225.202 kb on + strand at 225.202 kb on + strand at 225.203 kb on - strand at 225.204 kb on + strand at 225.204 kb on + strand at 225.204 kb on + strand at 225.244 kb on - strand at 225.325 kb on + strand at 225.325 kb on + strand at 225.326 kb on - strand at 225.326 kb on - strand at 225.326 kb on - strand at 225.326 kb on - strand at 225.329 kb on + strand at 225.329 kb on + strand at 225.329 kb on + strand at 225.330 kb on - strand at 225.380 kb on + strand at 225.381 kb on - strand at 225.381 kb on - strand at 225.383 kb on + strand at 225.383 kb on + strand at 225.383 kb on + strand at 225.384 kb on - strand at 225.427 kb on + strand at 225.428 kb on - strand at 225.446 kb on - strand at 225.510 kb on + strand at 225.510 kb on + strand at 225.525 kb on + strand at 225.537 kb on + strand at 225.539 kb on - strand at 225.539 kb on - strand at 225.545 kb on - strand at 225.559 kb on - strand at 225.575 kb on - strand at 225.592 kb on + strand at 225.672 kb on - strand at 225.689 kb on - strand at 225.702 kb on + strand at 225.703 kb on - strand at 225.703 kb on - strand at 225.746 kb on - strand at 225.757 kb on + strand at 225.758 kb on - strand at 225.758 kb on - strand at 225.758 kb on - strand at 225.848 kb on - strand at 225.848 kb on - strand at 225.878 kb on + strand at 225.902 kb on + strand at 225.902 kb on + strand at 225.903 kb on - strand at 225.903 kb on - strand at 225.916 kb on + strand at 225.917 kb on - strand at 225.929 kb on - strand at 225.950 kb on - strand at 225.950 kb on - strand at 225.960 kb on + strand at 225.969 kb on - strand at 225.980 kb on + strand at 225.983 kb on + strand at 225.983 kb on + strand at 226.050 kb on + strand at 226.051 kb on - strand at 226.105 kb on + strand, within GFF3640 at 226.105 kb on + strand, within GFF3640 at 226.105 kb on + strand, within GFF3640 at 226.203 kb on - strand, within GFF3640 at 226.214 kb on - strand, within GFF3640 at 226.315 kb on + strand at 226.316 kb on - strand at 226.316 kb on - strand at 226.316 kb on - strand at 226.429 kb on + strand at 226.429 kb on + strand at 226.430 kb on - strand at 226.436 kb on + strand at 226.436 kb on + strand at 226.436 kb on + strand at 226.587 kb on + strand, within GFF3641 at 226.587 kb on + strand, within GFF3641 at 226.588 kb on - strand, within GFF3641 at 226.631 kb on + strand, within GFF3641 at 226.631 kb on + strand, within GFF3641 at 226.631 kb on + strand, within GFF3641 at 226.632 kb on - strand, within GFF3641 at 226.632 kb on - strand, within GFF3641 at 226.635 kb on + strand, within GFF3641 at 226.635 kb on + strand, within GFF3641 at 226.635 kb on + strand, within GFF3641 at 226.636 kb on - strand, within GFF3641 at 226.636 kb on - strand, within GFF3641 at 226.636 kb on - strand, within GFF3641 at 226.636 kb on - strand, within GFF3641 at 226.651 kb on + strand at 226.652 kb on - strand at 226.717 kb on - strand at 226.911 kb on + strand at 227.009 kb on + strand at 227.078 kb on + strand at 227.171 kb on + strand at 227.171 kb on + strand at 227.171 kb on + strand at 227.171 kb on + strand at 227.171 kb on + strand at 227.172 kb on - strand at 227.172 kb on - strand at 227.172 kb on - strand at 227.217 kb on + strand at 227.217 kb on + strand at 227.242 kb on + strand at 227.243 kb on - strand at 227.243 kb on - strand at 227.243 kb on - strand at 227.288 kb on - strand at 227.288 kb on - strand at 227.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 225,104 + GFF3639 0.80 +0.0 225,117 - GFF3639 0.82 -1.9 225,117 - GFF3639 0.82 +0.5 225,117 - GFF3639 0.82 +0.6 225,117 - GFF3639 0.82 -0.5 225,120 + GFF3639 0.83 +0.2 225,121 - GFF3639 0.83 +1.4 225,166 + GFF3639 0.90 -0.5 225,178 + -0.4 225,202 + +0.3 225,202 + +1.7 225,202 + +0.4 225,203 - +1.3 225,204 + -0.0 225,204 + -1.2 225,204 + -1.6 225,244 - -0.6 225,325 + +1.7 225,325 + +0.1 225,326 - +1.4 225,326 - +0.6 225,326 - +0.2 225,326 - -1.7 225,329 + +0.6 225,329 + -0.4 225,329 + +0.6 225,330 - +0.2 225,380 + -0.1 225,381 - +0.7 225,381 - +1.5 225,383 + +0.5 225,383 + -0.1 225,383 + +0.2 225,384 - -0.1 225,427 + -0.9 225,428 - -0.4 225,446 - +0.5 225,510 + +0.6 225,510 + -0.4 225,525 + -0.3 225,537 + +0.2 225,539 - -0.5 225,539 - -2.1 225,545 - -0.1 225,559 - +0.5 225,575 - +0.3 225,592 + +0.8 225,672 - +1.4 225,689 - +0.0 225,702 + +1.5 225,703 - -0.8 225,703 - -0.0 225,746 - -0.4 225,757 + -0.4 225,758 - +0.5 225,758 - -0.5 225,758 - -0.1 225,848 - -0.1 225,848 - +0.3 225,878 + +0.6 225,902 + -0.3 225,902 + +1.1 225,903 - +1.3 225,903 - -1.3 225,916 + -0.9 225,917 - -0.6 225,929 - +0.9 225,950 - -1.4 225,950 - +0.5 225,960 + -2.0 225,969 - -1.3 225,980 + +0.1 225,983 + -1.4 225,983 + +0.9 226,050 + +0.8 226,051 - -0.3 226,105 + GFF3640 0.23 +1.6 226,105 + GFF3640 0.23 +1.1 226,105 + GFF3640 0.23 -0.2 226,203 - GFF3640 0.63 +0.1 226,214 - GFF3640 0.67 +0.1 226,315 + -0.8 226,316 - -0.7 226,316 - +0.8 226,316 - -1.4 226,429 + -0.1 226,429 + -0.3 226,430 - -0.9 226,436 + +1.1 226,436 + +0.2 226,436 + -0.2 226,587 + GFF3641 0.56 -0.3 226,587 + GFF3641 0.56 -0.5 226,588 - GFF3641 0.56 +0.9 226,631 + GFF3641 0.86 -0.1 226,631 + GFF3641 0.86 -0.2 226,631 + GFF3641 0.86 -0.3 226,632 - GFF3641 0.86 +0.2 226,632 - GFF3641 0.86 -0.1 226,635 + GFF3641 0.88 -0.6 226,635 + GFF3641 0.88 -0.8 226,635 + GFF3641 0.88 +1.3 226,636 - GFF3641 0.89 +2.4 226,636 - GFF3641 0.89 +0.1 226,636 - GFF3641 0.89 +0.3 226,636 - GFF3641 0.89 +0.1 226,651 + -0.2 226,652 - -0.2 226,717 - +0.3 226,911 + -0.0 227,009 + -0.6 227,078 + -1.0 227,171 + +0.0 227,171 + -1.0 227,171 + -0.5 227,171 + +0.4 227,171 + +1.1 227,172 - -0.4 227,172 - -0.3 227,172 - -0.3 227,217 + -0.6 227,217 + +0.8 227,242 + -0.2 227,243 - -1.2 227,243 - -1.2 227,243 - +0.3 227,288 - +0.2 227,288 - -0.5 227,293 - -0.6
Or see this region's nucleotide sequence