Strain Fitness in Pseudomonas sp. DMC3 around GFF3630

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3628 and GFF3629 overlap by 4 nucleotidesGFF3629 and GFF3630 are separated by 71 nucleotidesGFF3630 and GFF3631 are separated by 167 nucleotidesGFF3631 and GFF3632 overlap by 28 nucleotides GFF3628 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 214,998 to 215,768 GFF3628 GFF3629 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 215,765 to 216,385 GFF3629 GFF3630 - hypothetical protein, at 216,457 to 217,065 GFF3630 GFF3631 - Transcriptional activator protein CzcR, at 217,233 to 217,976 GFF3631 GFF3632 - Sensor protein CzcS, at 217,949 to 219,337 GFF3632 Position (kb) 216 217 218Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 215.479 kb on + strand, within GFF3628at 215.479 kb on + strand, within GFF3628at 215.479 kb on + strand, within GFF3628at 215.756 kb on + strandat 215.785 kb on + strandat 215.900 kb on + strand, within GFF3629at 215.900 kb on + strand, within GFF3629at 215.901 kb on - strand, within GFF3629at 215.904 kb on + strand, within GFF3629at 215.920 kb on - strand, within GFF3629at 215.930 kb on + strand, within GFF3629at 215.973 kb on - strand, within GFF3629at 215.973 kb on - strand, within GFF3629at 215.993 kb on + strand, within GFF3629at 215.993 kb on + strand, within GFF3629at 215.994 kb on - strand, within GFF3629at 215.994 kb on - strand, within GFF3629at 216.018 kb on + strand, within GFF3629at 216.018 kb on + strand, within GFF3629at 216.018 kb on + strand, within GFF3629at 216.018 kb on + strand, within GFF3629at 216.019 kb on - strand, within GFF3629at 216.032 kb on + strand, within GFF3629at 216.040 kb on + strand, within GFF3629at 216.042 kb on + strand, within GFF3629at 216.042 kb on + strand, within GFF3629at 216.042 kb on + strand, within GFF3629at 216.042 kb on + strand, within GFF3629at 216.042 kb on + strand, within GFF3629at 216.042 kb on + strand, within GFF3629at 216.042 kb on + strand, within GFF3629at 216.043 kb on - strand, within GFF3629at 216.043 kb on - strand, within GFF3629at 216.043 kb on - strand, within GFF3629at 216.043 kb on - strand, within GFF3629at 216.157 kb on - strand, within GFF3629at 216.165 kb on + strand, within GFF3629at 216.165 kb on + strand, within GFF3629at 216.165 kb on + strand, within GFF3629at 216.165 kb on + strand, within GFF3629at 216.165 kb on + strand, within GFF3629at 216.165 kb on + strand, within GFF3629at 216.165 kb on + strand, within GFF3629at 216.166 kb on - strand, within GFF3629at 216.166 kb on - strand, within GFF3629at 216.166 kb on - strand, within GFF3629at 216.166 kb on - strand, within GFF3629at 216.166 kb on - strand, within GFF3629at 216.166 kb on - strand, within GFF3629at 216.166 kb on - strand, within GFF3629at 216.288 kb on + strand, within GFF3629at 216.289 kb on - strand, within GFF3629at 216.289 kb on - strand, within GFF3629at 216.289 kb on - strand, within GFF3629at 216.458 kb on + strandat 216.458 kb on + strandat 216.458 kb on + strandat 216.458 kb on + strandat 216.458 kb on + strandat 216.458 kb on + strandat 216.459 kb on - strandat 216.459 kb on - strandat 216.459 kb on - strandat 216.459 kb on - strandat 216.578 kb on + strand, within GFF3630at 216.578 kb on + strand, within GFF3630at 216.579 kb on - strand, within GFF3630at 216.585 kb on + strand, within GFF3630at 216.725 kb on + strand, within GFF3630at 217.042 kb on - strandat 217.179 kb on - strandat 217.184 kb on + strandat 217.185 kb on - strandat 217.286 kb on + strandat 217.323 kb on + strand, within GFF3631at 217.323 kb on + strand, within GFF3631at 217.354 kb on - strand, within GFF3631at 217.406 kb on + strand, within GFF3631at 217.406 kb on + strand, within GFF3631at 217.406 kb on + strand, within GFF3631at 217.406 kb on + strand, within GFF3631at 217.407 kb on - strand, within GFF3631at 217.413 kb on + strand, within GFF3631at 217.413 kb on + strand, within GFF3631at 217.414 kb on - strand, within GFF3631at 217.414 kb on - strand, within GFF3631at 217.414 kb on - strand, within GFF3631at 217.414 kb on - strand, within GFF3631at 217.414 kb on - strand, within GFF3631at 217.495 kb on + strand, within GFF3631at 217.495 kb on + strand, within GFF3631at 217.495 kb on + strand, within GFF3631at 217.495 kb on + strand, within GFF3631at 217.495 kb on + strand, within GFF3631at 217.496 kb on - strand, within GFF3631at 217.569 kb on + strand, within GFF3631at 217.569 kb on + strand, within GFF3631at 217.569 kb on + strand, within GFF3631at 217.619 kb on + strand, within GFF3631at 217.620 kb on - strand, within GFF3631at 218.039 kb on + strandat 218.039 kb on + strandat 218.039 kb on + strandat 218.039 kb on + strandat 218.040 kb on - strandat 218.040 kb on - strandat 218.040 kb on - strandat 218.040 kb on - strandat 218.046 kb on - strandat 218.046 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
215,479 + GFF3628 0.62 +0.9
215,479 + GFF3628 0.62 +1.6
215,479 + GFF3628 0.62 -0.1
215,756 + +1.4
215,785 + -3.3
215,900 + GFF3629 0.22 -1.4
215,900 + GFF3629 0.22 +0.2
215,901 - GFF3629 0.22 +0.4
215,904 + GFF3629 0.22 +0.5
215,920 - GFF3629 0.25 +2.4
215,930 + GFF3629 0.27 -0.1
215,973 - GFF3629 0.33 +0.8
215,973 - GFF3629 0.33 -0.5
215,993 + GFF3629 0.37 +0.6
215,993 + GFF3629 0.37 +0.8
215,994 - GFF3629 0.37 -1.0
215,994 - GFF3629 0.37 +0.4
216,018 + GFF3629 0.41 -0.4
216,018 + GFF3629 0.41 +1.1
216,018 + GFF3629 0.41 +0.2
216,018 + GFF3629 0.41 -0.1
216,019 - GFF3629 0.41 -1.7
216,032 + GFF3629 0.43 -0.6
216,040 + GFF3629 0.44 -0.3
216,042 + GFF3629 0.45 +1.1
216,042 + GFF3629 0.45 +2.1
216,042 + GFF3629 0.45 -0.5
216,042 + GFF3629 0.45 +0.2
216,042 + GFF3629 0.45 -0.7
216,042 + GFF3629 0.45 +0.5
216,042 + GFF3629 0.45 +0.3
216,043 - GFF3629 0.45 +0.4
216,043 - GFF3629 0.45 +0.1
216,043 - GFF3629 0.45 +0.3
216,043 - GFF3629 0.45 -1.5
216,157 - GFF3629 0.63 +0.0
216,165 + GFF3629 0.64 -0.9
216,165 + GFF3629 0.64 -0.3
216,165 + GFF3629 0.64 +0.3
216,165 + GFF3629 0.64 -0.6
216,165 + GFF3629 0.64 +0.3
216,165 + GFF3629 0.64 +0.1
216,165 + GFF3629 0.64 -0.1
216,166 - GFF3629 0.65 +0.1
216,166 - GFF3629 0.65 +0.3
216,166 - GFF3629 0.65 -2.2
216,166 - GFF3629 0.65 -0.5
216,166 - GFF3629 0.65 +0.7
216,166 - GFF3629 0.65 -0.5
216,166 - GFF3629 0.65 -0.2
216,288 + GFF3629 0.84 -0.7
216,289 - GFF3629 0.84 -0.1
216,289 - GFF3629 0.84 -0.3
216,289 - GFF3629 0.84 -0.6
216,458 + +0.1
216,458 + -0.1
216,458 + -1.0
216,458 + -0.6
216,458 + +1.1
216,458 + -0.4
216,459 - -1.9
216,459 - -0.3
216,459 - -0.2
216,459 - +1.0
216,578 + GFF3630 0.20 +0.7
216,578 + GFF3630 0.20 -0.1
216,579 - GFF3630 0.20 +0.5
216,585 + GFF3630 0.21 +0.7
216,725 + GFF3630 0.44 +0.5
217,042 - -0.9
217,179 - -1.6
217,184 + -0.9
217,185 - +1.4
217,286 + +0.6
217,323 + GFF3631 0.12 -0.1
217,323 + GFF3631 0.12 -0.2
217,354 - GFF3631 0.16 +0.6
217,406 + GFF3631 0.23 +0.1
217,406 + GFF3631 0.23 +0.1
217,406 + GFF3631 0.23 -0.3
217,406 + GFF3631 0.23 -0.6
217,407 - GFF3631 0.23 +1.4
217,413 + GFF3631 0.24 -0.9
217,413 + GFF3631 0.24 +0.4
217,414 - GFF3631 0.24 -0.1
217,414 - GFF3631 0.24 +1.7
217,414 - GFF3631 0.24 +0.4
217,414 - GFF3631 0.24 -0.5
217,414 - GFF3631 0.24 -0.7
217,495 + GFF3631 0.35 -0.6
217,495 + GFF3631 0.35 +0.7
217,495 + GFF3631 0.35 +0.4
217,495 + GFF3631 0.35 +0.4
217,495 + GFF3631 0.35 -0.9
217,496 - GFF3631 0.35 -0.8
217,569 + GFF3631 0.45 -0.1
217,569 + GFF3631 0.45 +0.3
217,569 + GFF3631 0.45 +0.5
217,619 + GFF3631 0.52 -1.7
217,620 - GFF3631 0.52 +0.0
218,039 + +0.5
218,039 + -0.1
218,039 + -0.1
218,039 + +0.5
218,040 - -0.5
218,040 - -0.9
218,040 - -0.4
218,040 - +0.6
218,046 - +0.7
218,046 - -0.6

Or see this region's nucleotide sequence