Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF359 and GFF360 are separated by 119 nucleotides GFF360 and GFF361 are separated by 123 nucleotides GFF361 and GFF362 are separated by 196 nucleotides GFF362 and GFF363 are separated by 181 nucleotides
GFF359 - Argininosuccinate lyase, at 398,688 to 400,082
GFF359
GFF360 - Glutathione S-transferase, at 400,202 to 400,861
GFF360
GFF361 - hypothetical protein, at 400,985 to 401,275
GFF361
GFF362 - hypothetical protein, at 401,472 to 401,717
GFF362
GFF363 - Adenylate cyclase, at 401,899 to 404,742
GFF363
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.081 kb on - strand at 400.081 kb on - strand at 400.383 kb on + strand, within GFF360 at 400.383 kb on + strand, within GFF360 at 400.384 kb on - strand, within GFF360 at 400.392 kb on + strand, within GFF360 at 400.392 kb on + strand, within GFF360 at 400.393 kb on - strand, within GFF360 at 400.393 kb on - strand, within GFF360 at 400.393 kb on - strand, within GFF360 at 400.393 kb on - strand, within GFF360 at 400.428 kb on + strand, within GFF360 at 400.539 kb on + strand, within GFF360 at 400.566 kb on + strand, within GFF360 at 400.566 kb on + strand, within GFF360 at 400.566 kb on + strand, within GFF360 at 400.566 kb on + strand, within GFF360 at 400.566 kb on + strand, within GFF360 at 400.566 kb on + strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.567 kb on - strand, within GFF360 at 400.595 kb on + strand, within GFF360 at 400.596 kb on - strand, within GFF360 at 400.596 kb on - strand, within GFF360 at 400.688 kb on - strand, within GFF360 at 400.689 kb on + strand, within GFF360 at 400.689 kb on + strand, within GFF360 at 400.690 kb on - strand, within GFF360 at 400.824 kb on + strand at 400.824 kb on + strand at 400.824 kb on + strand at 400.824 kb on + strand at 400.824 kb on + strand at 400.824 kb on + strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.825 kb on - strand at 400.827 kb on + strand at 400.827 kb on + strand at 400.827 kb on + strand at 400.828 kb on - strand at 400.828 kb on - strand at 400.828 kb on - strand at 400.828 kb on - strand at 400.828 kb on - strand at 400.902 kb on + strand at 400.902 kb on + strand at 400.903 kb on - strand at 400.903 kb on - strand at 400.903 kb on - strand at 400.903 kb on - strand at 400.904 kb on + strand at 400.904 kb on + strand at 400.904 kb on + strand at 400.904 kb on + strand at 400.905 kb on - strand at 401.003 kb on - strand at 401.199 kb on + strand, within GFF361 at 401.225 kb on + strand, within GFF361 at 401.225 kb on + strand, within GFF361 at 401.324 kb on + strand at 401.324 kb on + strand at 401.325 kb on - strand at 401.325 kb on - strand at 401.325 kb on - strand at 401.358 kb on + strand at 401.358 kb on + strand at 401.359 kb on - strand at 401.431 kb on - strand at 401.431 kb on - strand at 401.431 kb on - strand at 401.454 kb on - strand at 401.471 kb on + strand at 401.471 kb on + strand at 401.471 kb on + strand at 401.471 kb on + strand at 401.471 kb on + strand at 401.471 kb on + strand at 401.471 kb on + strand at 401.471 kb on + strand at 401.472 kb on - strand at 401.472 kb on - strand at 401.472 kb on - strand at 401.472 kb on - strand at 401.472 kb on - strand at 401.472 kb on - strand at 401.472 kb on - strand at 401.472 kb on - strand at 401.472 kb on - strand at 401.472 kb on - strand at 401.472 kb on - strand at 401.481 kb on - strand at 401.579 kb on + strand, within GFF362 at 401.579 kb on + strand, within GFF362 at 401.579 kb on + strand, within GFF362 at 401.579 kb on + strand, within GFF362 at 401.579 kb on + strand, within GFF362 at 401.579 kb on + strand, within GFF362 at 401.637 kb on + strand, within GFF362 at 401.637 kb on + strand, within GFF362 at 401.683 kb on + strand, within GFF362 at 401.684 kb on - strand, within GFF362 at 401.684 kb on - strand, within GFF362 at 401.684 kb on - strand, within GFF362 at 401.954 kb on + strand at 401.955 kb on - strand at 401.955 kb on - strand at 401.955 kb on - strand at 402.098 kb on - strand at 402.098 kb on - strand at 402.098 kb on - strand at 402.133 kb on + strand at 402.191 kb on - strand, within GFF363
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 400,081 - +0.3 400,081 - -1.1 400,383 + GFF360 0.27 +0.4 400,383 + GFF360 0.27 -0.2 400,384 - GFF360 0.28 +0.0 400,392 + GFF360 0.29 -1.3 400,392 + GFF360 0.29 -1.3 400,393 - GFF360 0.29 +0.6 400,393 - GFF360 0.29 -0.1 400,393 - GFF360 0.29 -0.8 400,393 - GFF360 0.29 +0.1 400,428 + GFF360 0.34 -0.0 400,539 + GFF360 0.51 -0.4 400,566 + GFF360 0.55 +0.3 400,566 + GFF360 0.55 -0.4 400,566 + GFF360 0.55 -0.2 400,566 + GFF360 0.55 -0.1 400,566 + GFF360 0.55 -1.3 400,566 + GFF360 0.55 +0.2 400,567 - GFF360 0.55 +0.0 400,567 - GFF360 0.55 -0.5 400,567 - GFF360 0.55 +0.9 400,567 - GFF360 0.55 -1.0 400,567 - GFF360 0.55 -0.1 400,567 - GFF360 0.55 -0.1 400,567 - GFF360 0.55 +0.8 400,567 - GFF360 0.55 +0.2 400,595 + GFF360 0.60 -0.2 400,596 - GFF360 0.60 -0.7 400,596 - GFF360 0.60 +0.9 400,688 - GFF360 0.74 -0.5 400,689 + GFF360 0.74 -0.1 400,689 + GFF360 0.74 +0.9 400,690 - GFF360 0.74 +0.0 400,824 + -0.6 400,824 + -0.3 400,824 + -0.1 400,824 + -0.3 400,824 + -0.5 400,824 + -2.0 400,825 - -0.5 400,825 - +0.2 400,825 - -0.8 400,825 - +0.1 400,825 - +0.9 400,825 - +0.2 400,825 - +0.4 400,825 - -2.0 400,825 - -0.5 400,825 - +0.2 400,827 + -0.9 400,827 + +1.6 400,827 + -0.7 400,828 - -0.1 400,828 - +1.8 400,828 - +0.4 400,828 - -0.1 400,828 - -0.3 400,902 + -0.4 400,902 + +1.2 400,903 - -1.0 400,903 - -0.2 400,903 - -1.7 400,903 - +0.2 400,904 + +0.5 400,904 + +0.3 400,904 + -0.7 400,904 + -0.4 400,905 - +0.5 401,003 - -0.7 401,199 + GFF361 0.74 +0.6 401,225 + GFF361 0.82 +0.8 401,225 + GFF361 0.82 -2.2 401,324 + -0.2 401,324 + -0.1 401,325 - -0.2 401,325 - +0.4 401,325 - -0.8 401,358 + +1.8 401,358 + +0.4 401,359 - +0.3 401,431 - -0.6 401,431 - -0.4 401,431 - +0.6 401,454 - +0.3 401,471 + -1.2 401,471 + -0.3 401,471 + -0.6 401,471 + +0.1 401,471 + -0.0 401,471 + -0.2 401,471 + +0.1 401,471 + +0.3 401,472 - +0.7 401,472 - +0.1 401,472 - -1.0 401,472 - -1.0 401,472 - +0.9 401,472 - -0.7 401,472 - +0.3 401,472 - -1.3 401,472 - +0.1 401,472 - +0.5 401,472 - +1.0 401,481 - -0.1 401,579 + GFF362 0.43 -0.8 401,579 + GFF362 0.43 +0.0 401,579 + GFF362 0.43 +0.1 401,579 + GFF362 0.43 -0.6 401,579 + GFF362 0.43 -0.4 401,579 + GFF362 0.43 +0.2 401,637 + GFF362 0.67 -0.6 401,637 + GFF362 0.67 +0.0 401,683 + GFF362 0.86 +0.5 401,684 - GFF362 0.86 +0.8 401,684 - GFF362 0.86 -1.0 401,684 - GFF362 0.86 -0.2 401,954 + +0.1 401,955 - +0.0 401,955 - +0.0 401,955 - +0.4 402,098 - -0.5 402,098 - -0.1 402,098 - -0.9 402,133 + +2.0 402,191 - GFF363 0.10 -0.1
Or see this region's nucleotide sequence