Strain Fitness in Pseudomonas sp. DMC3 around GFF3609

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3608 and GFF3609 are separated by 233 nucleotidesGFF3609 and GFF3610 are separated by 202 nucleotides GFF3608 - Universal stress protein E, at 192,894 to 193,814 GFF3608 GFF3609 - Anaerobic regulatory protein, at 194,048 to 194,788 GFF3609 GFF3610 - Putrescine transporter PotE, at 194,991 to 196,331 GFF3610 Position (kb) 194 195Strain fitness (log2 ratio) -2 -1 0 1 2at 193.085 kb on + strand, within GFF3608at 193.085 kb on + strand, within GFF3608at 193.085 kb on + strand, within GFF3608at 193.085 kb on + strand, within GFF3608at 193.086 kb on - strand, within GFF3608at 193.086 kb on - strand, within GFF3608at 193.086 kb on - strand, within GFF3608at 193.260 kb on - strand, within GFF3608at 193.287 kb on + strand, within GFF3608at 193.288 kb on - strand, within GFF3608at 193.410 kb on + strand, within GFF3608at 193.411 kb on - strand, within GFF3608at 193.411 kb on - strand, within GFF3608at 193.411 kb on - strand, within GFF3608at 193.411 kb on - strand, within GFF3608at 193.507 kb on + strand, within GFF3608at 193.507 kb on + strand, within GFF3608at 193.508 kb on - strand, within GFF3608at 193.508 kb on - strand, within GFF3608at 193.508 kb on - strand, within GFF3608at 193.508 kb on - strand, within GFF3608at 193.624 kb on + strand, within GFF3608at 193.625 kb on - strand, within GFF3608at 193.877 kb on + strandat 193.877 kb on + strandat 193.878 kb on - strandat 193.908 kb on + strandat 193.908 kb on + strandat 193.908 kb on + strandat 193.908 kb on + strandat 193.908 kb on + strandat 193.908 kb on + strandat 193.909 kb on - strandat 193.909 kb on - strandat 193.909 kb on - strandat 193.909 kb on - strandat 193.993 kb on + strandat 193.994 kb on - strandat 194.014 kb on + strandat 194.014 kb on + strandat 194.014 kb on + strandat 194.014 kb on + strandat 194.014 kb on + strandat 194.014 kb on + strandat 194.014 kb on + strandat 194.014 kb on + strandat 194.014 kb on + strandat 194.015 kb on - strandat 194.015 kb on - strandat 194.015 kb on - strandat 194.015 kb on - strandat 194.020 kb on + strandat 194.021 kb on - strandat 194.021 kb on - strandat 194.042 kb on + strandat 194.043 kb on - strandat 194.043 kb on - strandat 194.115 kb on + strandat 194.116 kb on - strandat 194.116 kb on - strandat 194.180 kb on + strand, within GFF3609at 194.180 kb on + strand, within GFF3609at 194.180 kb on + strand, within GFF3609at 194.181 kb on - strand, within GFF3609at 194.237 kb on + strand, within GFF3609at 194.251 kb on - strand, within GFF3609at 194.311 kb on + strand, within GFF3609at 194.312 kb on - strand, within GFF3609at 194.365 kb on + strand, within GFF3609at 194.365 kb on + strand, within GFF3609at 194.499 kb on + strand, within GFF3609at 194.588 kb on + strand, within GFF3609at 194.589 kb on - strand, within GFF3609at 194.589 kb on - strand, within GFF3609at 195.156 kb on + strand, within GFF3610at 195.203 kb on - strand, within GFF3610at 195.210 kb on + strand, within GFF3610at 195.211 kb on - strand, within GFF3610at 195.255 kb on + strand, within GFF3610at 195.255 kb on + strand, within GFF3610at 195.256 kb on - strand, within GFF3610at 195.261 kb on + strand, within GFF3610at 195.261 kb on + strand, within GFF3610at 195.262 kb on - strand, within GFF3610at 195.262 kb on - strand, within GFF3610at 195.262 kb on - strand, within GFF3610at 195.262 kb on - strand, within GFF3610at 195.361 kb on + strand, within GFF3610at 195.446 kb on + strand, within GFF3610at 195.702 kb on + strand, within GFF3610at 195.702 kb on + strand, within GFF3610at 195.702 kb on + strand, within GFF3610at 195.702 kb on + strand, within GFF3610at 195.703 kb on - strand, within GFF3610at 195.703 kb on - strand, within GFF3610at 195.703 kb on - strand, within GFF3610at 195.703 kb on - strand, within GFF3610at 195.703 kb on - strand, within GFF3610at 195.703 kb on - strand, within GFF3610at 195.734 kb on + strand, within GFF3610at 195.734 kb on + strand, within GFF3610at 195.735 kb on - strand, within GFF3610at 195.783 kb on + strand, within GFF3610at 195.784 kb on - strand, within GFF3610

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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193,085 + GFF3608 0.21 +0.9
193,085 + GFF3608 0.21 +0.5
193,085 + GFF3608 0.21 +1.1
193,085 + GFF3608 0.21 +0.6
193,086 - GFF3608 0.21 +0.6
193,086 - GFF3608 0.21 -0.9
193,086 - GFF3608 0.21 -0.1
193,260 - GFF3608 0.40 +0.5
193,287 + GFF3608 0.43 -0.7
193,288 - GFF3608 0.43 +0.4
193,410 + GFF3608 0.56 -1.2
193,411 - GFF3608 0.56 +0.9
193,411 - GFF3608 0.56 -0.5
193,411 - GFF3608 0.56 +0.3
193,411 - GFF3608 0.56 +0.2
193,507 + GFF3608 0.67 -0.8
193,507 + GFF3608 0.67 -0.5
193,508 - GFF3608 0.67 +0.2
193,508 - GFF3608 0.67 +0.2
193,508 - GFF3608 0.67 -0.3
193,508 - GFF3608 0.67 -0.3
193,624 + GFF3608 0.79 +0.3
193,625 - GFF3608 0.79 +0.8
193,877 + +0.3
193,877 + +1.1
193,878 - +0.5
193,908 + +0.2
193,908 + +0.2
193,908 + -1.2
193,908 + +0.8
193,908 + +1.4
193,908 + -0.4
193,909 - -0.2
193,909 - -0.4
193,909 - +0.9
193,909 - +1.1
193,993 + +0.1
193,994 - -0.6
194,014 + +0.0
194,014 + -0.3
194,014 + +1.1
194,014 + -0.4
194,014 + -0.1
194,014 + +0.4
194,014 + -0.4
194,014 + +0.4
194,014 + +0.2
194,015 - -0.7
194,015 - -0.3
194,015 - -1.5
194,015 - -0.2
194,020 + -1.0
194,021 - +0.4
194,021 - -0.9
194,042 + -0.1
194,043 - -0.4
194,043 - +0.5
194,115 + +0.7
194,116 - +0.1
194,116 - +0.5
194,180 + GFF3609 0.18 +0.1
194,180 + GFF3609 0.18 -0.0
194,180 + GFF3609 0.18 -1.1
194,181 - GFF3609 0.18 +1.1
194,237 + GFF3609 0.26 +0.1
194,251 - GFF3609 0.27 -0.9
194,311 + GFF3609 0.35 +0.5
194,312 - GFF3609 0.36 +0.6
194,365 + GFF3609 0.43 +1.3
194,365 + GFF3609 0.43 +0.9
194,499 + GFF3609 0.61 -0.1
194,588 + GFF3609 0.73 +0.9
194,589 - GFF3609 0.73 -0.3
194,589 - GFF3609 0.73 +0.1
195,156 + GFF3610 0.12 +1.9
195,203 - GFF3610 0.16 +0.1
195,210 + GFF3610 0.16 +0.1
195,211 - GFF3610 0.16 -1.4
195,255 + GFF3610 0.20 -0.6
195,255 + GFF3610 0.20 +0.2
195,256 - GFF3610 0.20 +0.1
195,261 + GFF3610 0.20 -0.8
195,261 + GFF3610 0.20 +0.2
195,262 - GFF3610 0.20 -0.9
195,262 - GFF3610 0.20 +0.2
195,262 - GFF3610 0.20 +0.0
195,262 - GFF3610 0.20 -1.4
195,361 + GFF3610 0.28 -1.0
195,446 + GFF3610 0.34 +0.3
195,702 + GFF3610 0.53 -1.0
195,702 + GFF3610 0.53 -1.0
195,702 + GFF3610 0.53 -0.1
195,702 + GFF3610 0.53 +0.7
195,703 - GFF3610 0.53 -1.9
195,703 - GFF3610 0.53 -0.1
195,703 - GFF3610 0.53 +1.7
195,703 - GFF3610 0.53 -1.6
195,703 - GFF3610 0.53 +0.6
195,703 - GFF3610 0.53 +0.4
195,734 + GFF3610 0.55 -0.1
195,734 + GFF3610 0.55 +1.4
195,735 - GFF3610 0.55 -0.3
195,783 + GFF3610 0.59 +0.4
195,784 - GFF3610 0.59 -0.2

Or see this region's nucleotide sequence