Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3601 and GFF3602 overlap by 4 nucleotides GFF3602 and GFF3603 are separated by 11 nucleotides GFF3603 and GFF3604 overlap by 4 nucleotides
GFF3601 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 187,587 to 188,396
GFF3601
GFF3602 - hypothetical protein, at 188,393 to 189,037
GFF3602
GFF3603 - Transcriptional regulatory protein QseB, at 189,049 to 189,711
GFF3603
GFF3604 - Sensor protein QseC, at 189,708 to 191,078
GFF3604
Position (kb) 189
190 Strain fitness (log2 ratio) -1
0
1 at 188.115 kb on + strand, within GFF3601 at 188.115 kb on + strand, within GFF3601 at 188.115 kb on + strand, within GFF3601 at 188.115 kb on + strand, within GFF3601 at 188.115 kb on + strand, within GFF3601 at 188.115 kb on + strand, within GFF3601 at 188.115 kb on + strand, within GFF3601 at 188.115 kb on + strand, within GFF3601 at 188.116 kb on - strand, within GFF3601 at 188.116 kb on - strand, within GFF3601 at 188.116 kb on - strand, within GFF3601 at 188.116 kb on - strand, within GFF3601 at 188.116 kb on - strand, within GFF3601 at 188.116 kb on - strand, within GFF3601 at 188.116 kb on - strand, within GFF3601 at 188.116 kb on - strand, within GFF3601 at 188.116 kb on - strand, within GFF3601 at 188.116 kb on - strand, within GFF3601 at 188.116 kb on - strand, within GFF3601 at 188.259 kb on + strand, within GFF3601 at 188.260 kb on - strand, within GFF3601 at 188.263 kb on + strand, within GFF3601 at 188.263 kb on + strand, within GFF3601 at 188.264 kb on - strand, within GFF3601 at 188.302 kb on + strand, within GFF3601 at 188.303 kb on - strand, within GFF3601 at 188.303 kb on - strand, within GFF3601 at 188.745 kb on - strand, within GFF3602 at 188.765 kb on + strand, within GFF3602 at 188.766 kb on - strand, within GFF3602 at 188.766 kb on - strand, within GFF3602 at 188.870 kb on + strand, within GFF3602 at 188.990 kb on - strand at 188.990 kb on - strand at 189.056 kb on + strand at 189.056 kb on + strand at 189.057 kb on - strand at 189.059 kb on + strand at 189.077 kb on + strand at 189.077 kb on + strand at 189.078 kb on - strand at 189.078 kb on - strand at 189.097 kb on + strand at 189.097 kb on + strand at 189.121 kb on + strand, within GFF3603 at 189.122 kb on - strand, within GFF3603 at 189.340 kb on + strand, within GFF3603 at 189.340 kb on + strand, within GFF3603 at 189.340 kb on + strand, within GFF3603 at 189.476 kb on - strand, within GFF3603 at 189.511 kb on + strand, within GFF3603 at 189.583 kb on + strand, within GFF3603 at 189.688 kb on + strand at 189.688 kb on + strand at 189.822 kb on + strand at 189.872 kb on + strand, within GFF3604 at 189.872 kb on + strand, within GFF3604 at 189.873 kb on - strand, within GFF3604 at 189.873 kb on - strand, within GFF3604 at 189.887 kb on + strand, within GFF3604 at 189.906 kb on + strand, within GFF3604 at 189.906 kb on + strand, within GFF3604 at 189.906 kb on + strand, within GFF3604 at 189.906 kb on + strand, within GFF3604 at 189.907 kb on - strand, within GFF3604 at 189.907 kb on - strand, within GFF3604 at 189.907 kb on - strand, within GFF3604 at 190.015 kb on + strand, within GFF3604 at 190.015 kb on + strand, within GFF3604 at 190.258 kb on + strand, within GFF3604 at 190.259 kb on - strand, within GFF3604 at 190.660 kb on + strand, within GFF3604
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 188,115 + GFF3601 0.65 +0.6 188,115 + GFF3601 0.65 +0.1 188,115 + GFF3601 0.65 -0.4 188,115 + GFF3601 0.65 -0.4 188,115 + GFF3601 0.65 -1.1 188,115 + GFF3601 0.65 -0.2 188,115 + GFF3601 0.65 -0.9 188,115 + GFF3601 0.65 -0.8 188,116 - GFF3601 0.65 +0.1 188,116 - GFF3601 0.65 -0.2 188,116 - GFF3601 0.65 +0.8 188,116 - GFF3601 0.65 -0.3 188,116 - GFF3601 0.65 -0.6 188,116 - GFF3601 0.65 +0.2 188,116 - GFF3601 0.65 -0.4 188,116 - GFF3601 0.65 +0.1 188,116 - GFF3601 0.65 +0.4 188,116 - GFF3601 0.65 +0.1 188,116 - GFF3601 0.65 +1.1 188,259 + GFF3601 0.83 +0.6 188,260 - GFF3601 0.83 -0.0 188,263 + GFF3601 0.83 -0.3 188,263 + GFF3601 0.83 -0.0 188,264 - GFF3601 0.84 -0.1 188,302 + GFF3601 0.88 -0.3 188,303 - GFF3601 0.88 -0.8 188,303 - GFF3601 0.88 +0.2 188,745 - GFF3602 0.55 +0.1 188,765 + GFF3602 0.58 +0.2 188,766 - GFF3602 0.58 -1.0 188,766 - GFF3602 0.58 +0.3 188,870 + GFF3602 0.74 -0.7 188,990 - -0.6 188,990 - -0.2 189,056 + +0.1 189,056 + +0.6 189,057 - +0.6 189,059 + -0.9 189,077 + +0.1 189,077 + -0.2 189,078 - -0.4 189,078 - -0.6 189,097 + -0.1 189,097 + -0.2 189,121 + GFF3603 0.11 +0.7 189,122 - GFF3603 0.11 +1.0 189,340 + GFF3603 0.44 +0.3 189,340 + GFF3603 0.44 -0.2 189,340 + GFF3603 0.44 +1.3 189,476 - GFF3603 0.64 +0.2 189,511 + GFF3603 0.70 +0.3 189,583 + GFF3603 0.81 -0.2 189,688 + +1.1 189,688 + +1.4 189,822 + -1.1 189,872 + GFF3604 0.12 +0.0 189,872 + GFF3604 0.12 +0.2 189,873 - GFF3604 0.12 -0.2 189,873 - GFF3604 0.12 -0.2 189,887 + GFF3604 0.13 +0.3 189,906 + GFF3604 0.14 +0.9 189,906 + GFF3604 0.14 +0.6 189,906 + GFF3604 0.14 -0.0 189,906 + GFF3604 0.14 +1.0 189,907 - GFF3604 0.15 -0.9 189,907 - GFF3604 0.15 +0.5 189,907 - GFF3604 0.15 +0.8 190,015 + GFF3604 0.22 -0.9 190,015 + GFF3604 0.22 +0.6 190,258 + GFF3604 0.40 -0.4 190,259 - GFF3604 0.40 +1.3 190,660 + GFF3604 0.69 +1.1
Or see this region's nucleotide sequence