Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF357 and GFF358 are separated by 137 nucleotides GFF358 and GFF359 are separated by 469 nucleotides
GFF357 - Porphobilinogen deaminase, at 396,393 to 397,334
GFF357
GFF358 - Sensory transduction protein LytR, at 397,472 to 398,218
GFF358
GFF359 - Argininosuccinate lyase, at 398,688 to 400,082
GFF359
Position (kb) 397
398
399 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 397.354 kb on - strand at 397.354 kb on - strand at 397.354 kb on - strand at 397.358 kb on - strand at 397.367 kb on - strand at 397.369 kb on + strand at 397.369 kb on + strand at 397.370 kb on - strand at 397.370 kb on - strand at 397.719 kb on + strand, within GFF358 at 397.719 kb on + strand, within GFF358 at 397.719 kb on + strand, within GFF358 at 397.719 kb on + strand, within GFF358 at 397.719 kb on + strand, within GFF358 at 397.720 kb on - strand, within GFF358 at 397.720 kb on - strand, within GFF358 at 397.720 kb on - strand, within GFF358 at 397.720 kb on - strand, within GFF358 at 397.740 kb on + strand, within GFF358 at 397.740 kb on + strand, within GFF358 at 397.740 kb on + strand, within GFF358 at 397.740 kb on + strand, within GFF358 at 397.740 kb on + strand, within GFF358 at 397.741 kb on - strand, within GFF358 at 397.741 kb on - strand, within GFF358 at 397.741 kb on - strand, within GFF358 at 397.741 kb on - strand, within GFF358 at 397.741 kb on - strand, within GFF358 at 397.923 kb on + strand, within GFF358 at 397.924 kb on - strand, within GFF358 at 397.924 kb on - strand, within GFF358 at 397.924 kb on - strand, within GFF358 at 397.924 kb on - strand, within GFF358 at 398.142 kb on + strand, within GFF358 at 398.142 kb on + strand, within GFF358 at 398.164 kb on + strand at 398.164 kb on + strand at 398.164 kb on + strand at 398.165 kb on - strand at 398.165 kb on - strand at 398.171 kb on + strand at 398.218 kb on + strand at 398.218 kb on + strand at 398.219 kb on - strand at 398.219 kb on - strand at 398.219 kb on - strand at 398.219 kb on - strand at 398.260 kb on + strand at 398.260 kb on + strand at 398.260 kb on + strand at 398.260 kb on + strand at 398.260 kb on + strand at 398.261 kb on - strand at 398.261 kb on - strand at 398.270 kb on + strand at 398.271 kb on - strand at 398.271 kb on - strand at 398.271 kb on - strand at 398.298 kb on + strand at 398.328 kb on + strand at 398.344 kb on - strand at 398.344 kb on - strand at 398.344 kb on - strand at 398.344 kb on - strand at 398.415 kb on + strand at 398.415 kb on + strand at 398.415 kb on + strand at 398.416 kb on - strand at 398.416 kb on - strand at 398.416 kb on - strand at 398.439 kb on + strand at 398.439 kb on + strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.440 kb on - strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.487 kb on + strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.488 kb on - strand at 398.499 kb on - strand at 398.499 kb on - strand at 398.518 kb on - strand at 398.545 kb on + strand at 398.597 kb on + strand at 398.598 kb on - strand at 398.598 kb on - strand at 398.634 kb on + strand at 398.634 kb on + strand at 398.634 kb on + strand at 398.635 kb on - strand at 398.635 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 397,354 - +1.8 397,354 - -0.3 397,354 - +1.3 397,358 - +0.1 397,367 - +0.6 397,369 + -1.4 397,369 + -0.2 397,370 - -0.6 397,370 - -0.3 397,719 + GFF358 0.33 +0.7 397,719 + GFF358 0.33 +0.4 397,719 + GFF358 0.33 -0.2 397,719 + GFF358 0.33 +0.5 397,719 + GFF358 0.33 -0.3 397,720 - GFF358 0.33 +0.2 397,720 - GFF358 0.33 -0.2 397,720 - GFF358 0.33 -0.3 397,720 - GFF358 0.33 +0.4 397,740 + GFF358 0.36 -0.4 397,740 + GFF358 0.36 +0.3 397,740 + GFF358 0.36 +0.8 397,740 + GFF358 0.36 +1.1 397,740 + GFF358 0.36 +0.8 397,741 - GFF358 0.36 +1.2 397,741 - GFF358 0.36 +1.2 397,741 - GFF358 0.36 +0.4 397,741 - GFF358 0.36 +1.0 397,741 - GFF358 0.36 +0.9 397,923 + GFF358 0.60 -0.0 397,924 - GFF358 0.61 +0.5 397,924 - GFF358 0.61 +0.4 397,924 - GFF358 0.61 -1.2 397,924 - GFF358 0.61 -1.4 398,142 + GFF358 0.90 +0.4 398,142 + GFF358 0.90 +0.5 398,164 + +1.6 398,164 + +0.3 398,164 + -0.0 398,165 - +0.3 398,165 - +0.1 398,171 + +1.3 398,218 + +0.4 398,218 + +1.0 398,219 - +0.7 398,219 - +0.6 398,219 - -1.6 398,219 - -0.8 398,260 + -0.2 398,260 + +0.5 398,260 + +0.2 398,260 + -0.1 398,260 + +0.5 398,261 - -1.6 398,261 - -1.7 398,270 + -0.1 398,271 - -1.9 398,271 - -0.1 398,271 - -0.4 398,298 + +0.1 398,328 + +0.8 398,344 - -1.9 398,344 - -1.0 398,344 - -0.4 398,344 - +0.8 398,415 + +0.2 398,415 + -0.4 398,415 + -1.3 398,416 - -0.6 398,416 - +0.8 398,416 - +0.1 398,439 + +0.2 398,439 + -0.1 398,440 - -2.6 398,440 - +0.2 398,440 - -1.6 398,440 - -0.7 398,440 - +0.1 398,440 - -1.0 398,440 - -1.2 398,440 - -1.6 398,440 - -0.2 398,440 - +0.3 398,487 + +0.2 398,487 + +0.4 398,487 + -0.3 398,487 + +1.2 398,487 + +0.0 398,487 + -0.0 398,487 + -0.4 398,487 + +1.0 398,488 - -0.2 398,488 - -1.2 398,488 - -0.9 398,488 - -1.5 398,488 - -1.0 398,488 - +0.0 398,499 - -0.2 398,499 - -0.5 398,518 - -1.4 398,545 + +1.0 398,597 + +0.5 398,598 - -1.0 398,598 - -0.3 398,634 + +0.9 398,634 + -0.0 398,634 + -0.4 398,635 - -3.3 398,635 - -2.2
Or see this region's nucleotide sequence