Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3556 and GFF3557 are separated by 24 nucleotides GFF3557 and GFF3558 are separated by 33 nucleotides GFF3558 and GFF3559 overlap by 8 nucleotides
GFF3556 - Glycerol dehydrogenase, at 140,178 to 141,302
GFF3556
GFF3557 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 141,327 to 142,097
GFF3557
GFF3558 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 142,131 to 142,835
GFF3558
GFF3559 - Vitamin B12 import ATP-binding protein BtuD, at 142,828 to 144,609
GFF3559
Position (kb) 142
143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 141.168 kb on + strand, within GFF3556 at 141.168 kb on + strand, within GFF3556 at 141.169 kb on - strand, within GFF3556 at 141.296 kb on + strand at 141.486 kb on + strand, within GFF3557 at 141.600 kb on - strand, within GFF3557 at 141.610 kb on + strand, within GFF3557 at 141.611 kb on - strand, within GFF3557 at 141.659 kb on + strand, within GFF3557 at 141.659 kb on + strand, within GFF3557 at 141.660 kb on - strand, within GFF3557 at 141.660 kb on - strand, within GFF3557 at 141.660 kb on - strand, within GFF3557 at 142.145 kb on - strand at 142.145 kb on - strand at 142.145 kb on - strand at 142.145 kb on - strand at 142.223 kb on - strand, within GFF3558 at 142.487 kb on + strand, within GFF3558 at 142.743 kb on - strand, within GFF3558 at 142.805 kb on - strand at 142.829 kb on + strand at 142.830 kb on - strand at 142.830 kb on - strand at 143.433 kb on + strand, within GFF3559 at 143.434 kb on - strand, within GFF3559 at 143.616 kb on + strand, within GFF3559 at 143.617 kb on - strand, within GFF3559 at 143.665 kb on + strand, within GFF3559
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 141,168 + GFF3556 0.88 -0.0 141,168 + GFF3556 0.88 -1.1 141,169 - GFF3556 0.88 -0.8 141,296 + +0.2 141,486 + GFF3557 0.21 +0.7 141,600 - GFF3557 0.35 -0.0 141,610 + GFF3557 0.37 -0.1 141,611 - GFF3557 0.37 +0.2 141,659 + GFF3557 0.43 +1.9 141,659 + GFF3557 0.43 -0.1 141,660 - GFF3557 0.43 -1.2 141,660 - GFF3557 0.43 +1.1 141,660 - GFF3557 0.43 -0.2 142,145 - +0.2 142,145 - +1.0 142,145 - -0.4 142,145 - -0.3 142,223 - GFF3558 0.13 +0.9 142,487 + GFF3558 0.50 +0.8 142,743 - GFF3558 0.87 +0.0 142,805 - +0.1 142,829 + +0.7 142,830 - -0.2 142,830 - -0.7 143,433 + GFF3559 0.34 -1.8 143,434 - GFF3559 0.34 -0.1 143,616 + GFF3559 0.44 +0.4 143,617 - GFF3559 0.44 -0.3 143,665 + GFF3559 0.47 -0.6
Or see this region's nucleotide sequence