Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3542 and GFF3543 are separated by 147 nucleotides GFF3543 and GFF3544 are separated by 58 nucleotides GFF3544 and GFF3545 are separated by 65 nucleotides
GFF3542 - hypothetical protein, at 128,131 to 129,024
GFF3542
GFF3543 - HTH-type transcriptional regulator LrpC, at 129,172 to 129,609
GFF3543
GFF3544 - hypothetical protein, at 129,668 to 129,997
GFF3544
GFF3545 - Modulator of FtsH protease YccA, at 130,063 to 130,734
GFF3545
Position (kb) 129
130 Strain fitness (log2 ratio) -2
-1
0
1
2 at 128.723 kb on + strand, within GFF3542 at 128.723 kb on + strand, within GFF3542 at 128.723 kb on + strand, within GFF3542 at 128.724 kb on - strand, within GFF3542 at 128.724 kb on - strand, within GFF3542 at 128.759 kb on + strand, within GFF3542 at 129.064 kb on - strand at 129.064 kb on - strand at 129.322 kb on + strand, within GFF3543 at 129.323 kb on - strand, within GFF3543 at 129.323 kb on - strand, within GFF3543 at 129.356 kb on - strand, within GFF3543 at 129.537 kb on + strand, within GFF3543 at 129.538 kb on - strand, within GFF3543 at 129.538 kb on - strand, within GFF3543 at 129.538 kb on - strand, within GFF3543 at 129.607 kb on + strand at 129.608 kb on - strand at 129.618 kb on + strand at 129.634 kb on - strand at 129.684 kb on + strand at 129.685 kb on - strand at 129.782 kb on + strand, within GFF3544 at 129.782 kb on + strand, within GFF3544 at 129.821 kb on + strand, within GFF3544 at 129.821 kb on + strand, within GFF3544 at 129.959 kb on + strand, within GFF3544 at 130.058 kb on + strand at 130.118 kb on + strand at 130.118 kb on + strand at 130.119 kb on - strand at 130.119 kb on - strand at 130.126 kb on + strand at 130.126 kb on + strand at 130.127 kb on - strand at 130.130 kb on + strand at 130.130 kb on + strand at 130.130 kb on + strand at 130.130 kb on + strand at 130.131 kb on - strand, within GFF3545 at 130.131 kb on - strand, within GFF3545 at 130.131 kb on - strand, within GFF3545 at 130.131 kb on - strand, within GFF3545 at 130.131 kb on - strand, within GFF3545 at 130.154 kb on + strand, within GFF3545 at 130.154 kb on + strand, within GFF3545 at 130.154 kb on + strand, within GFF3545 at 130.154 kb on + strand, within GFF3545 at 130.154 kb on + strand, within GFF3545 at 130.154 kb on + strand, within GFF3545 at 130.155 kb on - strand, within GFF3545 at 130.155 kb on - strand, within GFF3545 at 130.155 kb on - strand, within GFF3545 at 130.358 kb on + strand, within GFF3545 at 130.359 kb on - strand, within GFF3545 at 130.551 kb on - strand, within GFF3545 at 130.655 kb on + strand, within GFF3545 at 130.655 kb on + strand, within GFF3545 at 130.655 kb on + strand, within GFF3545 at 130.655 kb on + strand, within GFF3545 at 130.656 kb on - strand, within GFF3545 at 130.656 kb on - strand, within GFF3545 at 130.685 kb on - strand at 130.707 kb on + strand at 130.710 kb on + strand at 130.711 kb on - strand at 130.711 kb on - strand at 130.711 kb on - strand at 130.718 kb on + strand at 130.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 128,723 + GFF3542 0.66 +0.0 128,723 + GFF3542 0.66 -0.4 128,723 + GFF3542 0.66 -0.9 128,724 - GFF3542 0.66 -1.2 128,724 - GFF3542 0.66 -1.2 128,759 + GFF3542 0.70 -0.9 129,064 - +0.3 129,064 - -0.5 129,322 + GFF3543 0.34 +1.1 129,323 - GFF3543 0.34 -0.1 129,323 - GFF3543 0.34 -0.2 129,356 - GFF3543 0.42 +0.8 129,537 + GFF3543 0.83 +0.7 129,538 - GFF3543 0.84 +0.0 129,538 - GFF3543 0.84 -0.9 129,538 - GFF3543 0.84 -1.5 129,607 + +0.4 129,608 - +0.9 129,618 + -0.8 129,634 - +0.3 129,684 + +0.1 129,685 - -0.2 129,782 + GFF3544 0.35 -0.8 129,782 + GFF3544 0.35 +0.2 129,821 + GFF3544 0.46 -0.7 129,821 + GFF3544 0.46 -0.7 129,959 + GFF3544 0.88 -1.3 130,058 + +2.1 130,118 + -0.6 130,118 + +1.7 130,119 - +0.9 130,119 - +0.6 130,126 + -1.2 130,126 + +0.6 130,127 - +1.2 130,130 + -0.4 130,130 + +0.4 130,130 + -0.9 130,130 + +0.3 130,131 - GFF3545 0.10 +0.1 130,131 - GFF3545 0.10 +0.3 130,131 - GFF3545 0.10 +1.0 130,131 - GFF3545 0.10 +0.3 130,131 - GFF3545 0.10 -1.0 130,154 + GFF3545 0.14 -0.5 130,154 + GFF3545 0.14 +0.2 130,154 + GFF3545 0.14 -0.7 130,154 + GFF3545 0.14 -1.2 130,154 + GFF3545 0.14 -1.9 130,154 + GFF3545 0.14 +1.2 130,155 - GFF3545 0.14 +0.7 130,155 - GFF3545 0.14 +0.4 130,155 - GFF3545 0.14 +1.0 130,358 + GFF3545 0.44 -0.2 130,359 - GFF3545 0.44 +0.4 130,551 - GFF3545 0.73 -0.6 130,655 + GFF3545 0.88 -0.9 130,655 + GFF3545 0.88 +0.6 130,655 + GFF3545 0.88 +0.9 130,655 + GFF3545 0.88 +0.4 130,656 - GFF3545 0.88 +0.3 130,656 - GFF3545 0.88 +0.5 130,685 - -2.2 130,707 + +0.4 130,710 + +0.9 130,711 - -0.5 130,711 - -1.4 130,711 - +0.7 130,718 + -0.0 130,793 - +1.1
Or see this region's nucleotide sequence