Strain Fitness in Pseudomonas sp. DMC3 around GFF3517

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3516 and GFF3517 overlap by 4 nucleotidesGFF3517 and GFF3518 are separated by 69 nucleotides GFF3516 - hypothetical protein, at 94,962 to 96,404 GFF3516 GFF3517 - hypothetical protein, at 96,401 to 97,423 GFF3517 GFF3518 - N-acetylgalactosamine-6-O-sulfatase, at 97,493 to 99,067 GFF3518 Position (kb) 96 97 98Strain fitness (log2 ratio) -2 -1 0 1 2at 95.434 kb on + strand, within GFF3516at 95.802 kb on - strand, within GFF3516at 95.805 kb on + strand, within GFF3516at 95.805 kb on + strand, within GFF3516at 95.806 kb on - strand, within GFF3516at 95.806 kb on - strand, within GFF3516at 95.911 kb on - strand, within GFF3516at 95.913 kb on - strand, within GFF3516at 95.913 kb on - strand, within GFF3516at 95.913 kb on - strand, within GFF3516at 96.027 kb on + strand, within GFF3516at 96.028 kb on - strand, within GFF3516at 96.077 kb on + strand, within GFF3516at 96.077 kb on + strand, within GFF3516at 96.078 kb on - strand, within GFF3516at 96.078 kb on - strand, within GFF3516at 96.078 kb on - strand, within GFF3516at 96.078 kb on - strand, within GFF3516at 96.177 kb on + strand, within GFF3516at 96.177 kb on + strand, within GFF3516at 96.177 kb on + strand, within GFF3516at 96.178 kb on - strand, within GFF3516at 96.195 kb on - strand, within GFF3516at 96.247 kb on + strand, within GFF3516at 96.247 kb on + strand, within GFF3516at 96.247 kb on + strand, within GFF3516at 96.248 kb on - strand, within GFF3516at 96.248 kb on - strand, within GFF3516at 96.248 kb on - strand, within GFF3516at 96.248 kb on - strand, within GFF3516at 96.248 kb on - strand, within GFF3516at 96.248 kb on - strand, within GFF3516at 96.259 kb on - strand, within GFF3516at 96.315 kb on - strandat 96.642 kb on - strand, within GFF3517at 96.884 kb on + strand, within GFF3517at 96.884 kb on + strand, within GFF3517at 96.953 kb on + strand, within GFF3517at 96.953 kb on + strand, within GFF3517at 96.953 kb on + strand, within GFF3517at 96.953 kb on + strand, within GFF3517at 96.953 kb on + strand, within GFF3517at 96.954 kb on - strand, within GFF3517at 96.954 kb on - strand, within GFF3517at 97.283 kb on + strand, within GFF3517at 97.283 kb on + strand, within GFF3517at 97.385 kb on + strandat 97.386 kb on - strandat 97.421 kb on + strandat 97.422 kb on - strandat 97.446 kb on + strandat 97.503 kb on + strandat 97.504 kb on - strandat 97.533 kb on + strandat 97.533 kb on + strandat 97.534 kb on - strandat 97.637 kb on + strandat 97.638 kb on - strandat 97.658 kb on + strand, within GFF3518at 97.712 kb on + strand, within GFF3518at 97.712 kb on + strand, within GFF3518at 97.712 kb on + strand, within GFF3518at 97.713 kb on - strand, within GFF3518at 97.713 kb on - strand, within GFF3518at 97.713 kb on - strand, within GFF3518at 97.715 kb on + strand, within GFF3518at 97.715 kb on + strand, within GFF3518at 97.716 kb on - strand, within GFF3518at 97.868 kb on + strand, within GFF3518at 97.868 kb on + strand, within GFF3518at 97.869 kb on - strand, within GFF3518at 97.869 kb on - strand, within GFF3518at 97.916 kb on + strand, within GFF3518at 97.917 kb on - strand, within GFF3518at 97.961 kb on + strand, within GFF3518at 97.998 kb on - strand, within GFF3518at 98.366 kb on + strand, within GFF3518at 98.366 kb on + strand, within GFF3518at 98.367 kb on - strand, within GFF3518

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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95,434 + GFF3516 0.33 -0.3
95,802 - GFF3516 0.58 -0.8
95,805 + GFF3516 0.58 +0.7
95,805 + GFF3516 0.58 +0.6
95,806 - GFF3516 0.58 -0.3
95,806 - GFF3516 0.58 +0.8
95,911 - GFF3516 0.66 +0.1
95,913 - GFF3516 0.66 -0.1
95,913 - GFF3516 0.66 -0.3
95,913 - GFF3516 0.66 +0.3
96,027 + GFF3516 0.74 +0.6
96,028 - GFF3516 0.74 -0.3
96,077 + GFF3516 0.77 -0.8
96,077 + GFF3516 0.77 +0.2
96,078 - GFF3516 0.77 +0.7
96,078 - GFF3516 0.77 -1.1
96,078 - GFF3516 0.77 -0.7
96,078 - GFF3516 0.77 -0.5
96,177 + GFF3516 0.84 -0.6
96,177 + GFF3516 0.84 -0.1
96,177 + GFF3516 0.84 +0.2
96,178 - GFF3516 0.84 +0.5
96,195 - GFF3516 0.85 -1.5
96,247 + GFF3516 0.89 -1.3
96,247 + GFF3516 0.89 +0.1
96,247 + GFF3516 0.89 -0.6
96,248 - GFF3516 0.89 -0.5
96,248 - GFF3516 0.89 +0.0
96,248 - GFF3516 0.89 +0.2
96,248 - GFF3516 0.89 +0.7
96,248 - GFF3516 0.89 +0.1
96,248 - GFF3516 0.89 +0.7
96,259 - GFF3516 0.90 +0.2
96,315 - +0.8
96,642 - GFF3517 0.24 -0.1
96,884 + GFF3517 0.47 +0.3
96,884 + GFF3517 0.47 +0.3
96,953 + GFF3517 0.54 +0.1
96,953 + GFF3517 0.54 +1.1
96,953 + GFF3517 0.54 +1.1
96,953 + GFF3517 0.54 +0.3
96,953 + GFF3517 0.54 -1.7
96,954 - GFF3517 0.54 +0.2
96,954 - GFF3517 0.54 -0.9
97,283 + GFF3517 0.86 -1.2
97,283 + GFF3517 0.86 +1.3
97,385 + -0.7
97,386 - +0.2
97,421 + +0.2
97,422 - -1.2
97,446 + -0.0
97,503 + +0.1
97,504 - -1.5
97,533 + -0.3
97,533 + -1.0
97,534 - +0.0
97,637 + -0.5
97,638 - -0.4
97,658 + GFF3518 0.10 +0.7
97,712 + GFF3518 0.14 -0.5
97,712 + GFF3518 0.14 +0.6
97,712 + GFF3518 0.14 +2.3
97,713 - GFF3518 0.14 -0.6
97,713 - GFF3518 0.14 -0.6
97,713 - GFF3518 0.14 +0.8
97,715 + GFF3518 0.14 -0.2
97,715 + GFF3518 0.14 +0.3
97,716 - GFF3518 0.14 -0.5
97,868 + GFF3518 0.24 +0.2
97,868 + GFF3518 0.24 -1.4
97,869 - GFF3518 0.24 +0.5
97,869 - GFF3518 0.24 -0.3
97,916 + GFF3518 0.27 -0.3
97,917 - GFF3518 0.27 -1.1
97,961 + GFF3518 0.30 -0.6
97,998 - GFF3518 0.32 -0.1
98,366 + GFF3518 0.55 -0.8
98,366 + GFF3518 0.55 +0.1
98,367 - GFF3518 0.55 -1.9

Or see this region's nucleotide sequence