Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3511 and GFF3512 overlap by 4 nucleotides GFF3512 and GFF3513 overlap by 4 nucleotides GFF3513 and GFF3514 overlap by 14 nucleotides GFF3514 and GFF3515 are separated by 1 nucleotides
GFF3511 - hypothetical protein, at 89,896 to 90,876
GFF3511
GFF3512 - hypothetical protein, at 90,873 to 91,808
GFF3512
GFF3513 - hypothetical protein, at 91,805 to 92,404
GFF3513
GFF3514 - hypothetical protein, at 92,391 to 93,383
GFF3514
GFF3515 - hypothetical protein, at 93,385 to 94,965
GFF3515
Position (kb) 91
92
93 Strain fitness (log2 ratio) -2
-1
0
1
2 at 90.894 kb on + strand at 90.894 kb on + strand at 90.894 kb on + strand at 90.895 kb on - strand at 90.895 kb on - strand at 90.895 kb on - strand at 90.895 kb on - strand at 91.169 kb on + strand, within GFF3512 at 91.169 kb on + strand, within GFF3512 at 91.169 kb on + strand, within GFF3512 at 91.169 kb on + strand, within GFF3512 at 91.170 kb on - strand, within GFF3512 at 91.170 kb on - strand, within GFF3512 at 91.170 kb on - strand, within GFF3512 at 91.170 kb on - strand, within GFF3512 at 91.170 kb on - strand, within GFF3512 at 91.383 kb on - strand, within GFF3512 at 91.557 kb on + strand, within GFF3512 at 91.557 kb on + strand, within GFF3512 at 91.558 kb on - strand, within GFF3512 at 91.558 kb on - strand, within GFF3512 at 91.558 kb on - strand, within GFF3512 at 91.558 kb on - strand, within GFF3512 at 91.646 kb on + strand, within GFF3512 at 91.647 kb on - strand, within GFF3512 at 91.817 kb on - strand at 91.868 kb on + strand, within GFF3513 at 91.868 kb on + strand, within GFF3513 at 91.869 kb on - strand, within GFF3513 at 91.915 kb on - strand, within GFF3513 at 91.915 kb on - strand, within GFF3513 at 91.947 kb on - strand, within GFF3513 at 91.947 kb on - strand, within GFF3513 at 92.151 kb on + strand, within GFF3513 at 92.151 kb on + strand, within GFF3513 at 92.152 kb on - strand, within GFF3513 at 92.152 kb on - strand, within GFF3513 at 92.320 kb on - strand, within GFF3513 at 92.372 kb on + strand at 92.372 kb on + strand at 92.406 kb on + strand at 92.407 kb on - strand at 92.420 kb on - strand at 92.420 kb on - strand at 92.420 kb on - strand at 92.420 kb on - strand at 92.449 kb on - strand at 92.628 kb on + strand, within GFF3514 at 92.628 kb on + strand, within GFF3514 at 92.628 kb on + strand, within GFF3514 at 92.628 kb on + strand, within GFF3514 at 92.629 kb on - strand, within GFF3514 at 92.629 kb on - strand, within GFF3514 at 92.818 kb on + strand, within GFF3514 at 92.818 kb on + strand, within GFF3514 at 92.819 kb on - strand, within GFF3514 at 92.836 kb on - strand, within GFF3514 at 93.080 kb on + strand, within GFF3514 at 93.081 kb on - strand, within GFF3514 at 93.081 kb on - strand, within GFF3514 at 93.081 kb on - strand, within GFF3514 at 93.210 kb on + strand, within GFF3514 at 93.210 kb on + strand, within GFF3514 at 93.210 kb on + strand, within GFF3514 at 93.211 kb on - strand, within GFF3514 at 93.211 kb on - strand, within GFF3514 at 93.322 kb on - strand at 93.322 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 90,894 + -0.9 90,894 + +0.4 90,894 + +0.1 90,895 - +0.1 90,895 - -1.0 90,895 - +1.8 90,895 - +0.1 91,169 + GFF3512 0.32 -0.2 91,169 + GFF3512 0.32 -0.5 91,169 + GFF3512 0.32 +1.3 91,169 + GFF3512 0.32 +0.5 91,170 - GFF3512 0.32 -1.4 91,170 - GFF3512 0.32 -1.2 91,170 - GFF3512 0.32 +0.1 91,170 - GFF3512 0.32 +0.6 91,170 - GFF3512 0.32 -0.6 91,383 - GFF3512 0.54 +1.1 91,557 + GFF3512 0.73 -0.4 91,557 + GFF3512 0.73 +0.6 91,558 - GFF3512 0.73 -0.2 91,558 - GFF3512 0.73 -0.8 91,558 - GFF3512 0.73 -0.9 91,558 - GFF3512 0.73 +0.9 91,646 + GFF3512 0.83 -0.3 91,647 - GFF3512 0.83 -0.2 91,817 - +0.3 91,868 + GFF3513 0.10 -1.4 91,868 + GFF3513 0.10 +0.4 91,869 - GFF3513 0.11 +0.3 91,915 - GFF3513 0.18 -1.5 91,915 - GFF3513 0.18 -0.5 91,947 - GFF3513 0.24 +0.1 91,947 - GFF3513 0.24 -1.1 92,151 + GFF3513 0.58 -0.1 92,151 + GFF3513 0.58 -1.8 92,152 - GFF3513 0.58 -0.8 92,152 - GFF3513 0.58 -1.1 92,320 - GFF3513 0.86 -0.9 92,372 + -1.1 92,372 + +0.1 92,406 + -0.5 92,407 - -0.4 92,420 - +0.2 92,420 - -0.7 92,420 - -0.4 92,420 - +0.9 92,449 - +0.8 92,628 + GFF3514 0.24 -0.4 92,628 + GFF3514 0.24 -0.9 92,628 + GFF3514 0.24 -1.4 92,628 + GFF3514 0.24 +0.1 92,629 - GFF3514 0.24 +0.3 92,629 - GFF3514 0.24 +1.2 92,818 + GFF3514 0.43 +1.7 92,818 + GFF3514 0.43 -1.0 92,819 - GFF3514 0.43 +0.2 92,836 - GFF3514 0.45 -1.5 93,080 + GFF3514 0.69 -0.6 93,081 - GFF3514 0.69 -1.2 93,081 - GFF3514 0.69 +0.3 93,081 - GFF3514 0.69 -0.1 93,210 + GFF3514 0.82 +1.7 93,210 + GFF3514 0.82 -0.2 93,210 + GFF3514 0.82 -0.2 93,211 - GFF3514 0.83 +0.3 93,211 - GFF3514 0.83 +0.3 93,322 - +0.2 93,322 - -1.1
Or see this region's nucleotide sequence