Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3510 and GFF3511 are separated by 22 nucleotides GFF3511 and GFF3512 overlap by 4 nucleotides GFF3512 and GFF3513 overlap by 4 nucleotides
GFF3510 - hypothetical protein, at 88,848 to 89,873
GFF3510
GFF3511 - hypothetical protein, at 89,896 to 90,876
GFF3511
GFF3512 - hypothetical protein, at 90,873 to 91,808
GFF3512
GFF3513 - hypothetical protein, at 91,805 to 92,404
GFF3513
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1
2 at 88.920 kb on - strand at 88.920 kb on - strand at 89.032 kb on + strand, within GFF3510 at 89.033 kb on - strand, within GFF3510 at 89.033 kb on - strand, within GFF3510 at 89.098 kb on - strand, within GFF3510 at 89.175 kb on + strand, within GFF3510 at 89.175 kb on + strand, within GFF3510 at 89.175 kb on + strand, within GFF3510 at 89.176 kb on - strand, within GFF3510 at 89.259 kb on + strand, within GFF3510 at 89.259 kb on + strand, within GFF3510 at 89.259 kb on + strand, within GFF3510 at 89.259 kb on + strand, within GFF3510 at 89.260 kb on - strand, within GFF3510 at 89.260 kb on - strand, within GFF3510 at 89.260 kb on - strand, within GFF3510 at 89.413 kb on - strand, within GFF3510 at 89.413 kb on - strand, within GFF3510 at 89.413 kb on - strand, within GFF3510 at 89.430 kb on + strand, within GFF3510 at 89.430 kb on + strand, within GFF3510 at 89.431 kb on - strand, within GFF3510 at 89.431 kb on - strand, within GFF3510 at 89.431 kb on - strand, within GFF3510 at 89.431 kb on - strand, within GFF3510 at 89.432 kb on + strand, within GFF3510 at 89.433 kb on - strand, within GFF3510 at 89.465 kb on + strand, within GFF3510 at 89.465 kb on + strand, within GFF3510 at 89.465 kb on + strand, within GFF3510 at 89.465 kb on + strand, within GFF3510 at 89.466 kb on - strand, within GFF3510 at 89.466 kb on - strand, within GFF3510 at 89.466 kb on - strand, within GFF3510 at 89.466 kb on - strand, within GFF3510 at 89.466 kb on - strand, within GFF3510 at 89.466 kb on - strand, within GFF3510 at 89.470 kb on - strand, within GFF3510 at 89.550 kb on + strand, within GFF3510 at 89.551 kb on - strand, within GFF3510 at 89.784 kb on - strand at 89.871 kb on + strand at 90.586 kb on + strand, within GFF3511 at 90.586 kb on + strand, within GFF3511 at 90.586 kb on + strand, within GFF3511 at 90.587 kb on - strand, within GFF3511 at 90.587 kb on - strand, within GFF3511 at 90.587 kb on - strand, within GFF3511 at 90.800 kb on - strand at 90.894 kb on + strand at 90.894 kb on + strand at 90.894 kb on + strand at 90.895 kb on - strand at 90.895 kb on - strand at 90.895 kb on - strand at 90.895 kb on - strand at 91.169 kb on + strand, within GFF3512 at 91.169 kb on + strand, within GFF3512 at 91.169 kb on + strand, within GFF3512 at 91.169 kb on + strand, within GFF3512 at 91.170 kb on - strand, within GFF3512 at 91.170 kb on - strand, within GFF3512 at 91.170 kb on - strand, within GFF3512 at 91.170 kb on - strand, within GFF3512 at 91.170 kb on - strand, within GFF3512 at 91.383 kb on - strand, within GFF3512 at 91.557 kb on + strand, within GFF3512 at 91.557 kb on + strand, within GFF3512 at 91.558 kb on - strand, within GFF3512 at 91.558 kb on - strand, within GFF3512 at 91.558 kb on - strand, within GFF3512 at 91.558 kb on - strand, within GFF3512 at 91.646 kb on + strand, within GFF3512 at 91.647 kb on - strand, within GFF3512 at 91.817 kb on - strand at 91.868 kb on + strand, within GFF3513 at 91.868 kb on + strand, within GFF3513 at 91.869 kb on - strand, within GFF3513
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 88,920 - -0.2 88,920 - -0.1 89,032 + GFF3510 0.18 +0.8 89,033 - GFF3510 0.18 +0.9 89,033 - GFF3510 0.18 -1.2 89,098 - GFF3510 0.24 -0.7 89,175 + GFF3510 0.32 -0.6 89,175 + GFF3510 0.32 -0.2 89,175 + GFF3510 0.32 -0.2 89,176 - GFF3510 0.32 +0.9 89,259 + GFF3510 0.40 -1.7 89,259 + GFF3510 0.40 -0.9 89,259 + GFF3510 0.40 -0.7 89,259 + GFF3510 0.40 -0.1 89,260 - GFF3510 0.40 +0.1 89,260 - GFF3510 0.40 +0.3 89,260 - GFF3510 0.40 -1.0 89,413 - GFF3510 0.55 -0.9 89,413 - GFF3510 0.55 +0.2 89,413 - GFF3510 0.55 -0.2 89,430 + GFF3510 0.57 +0.3 89,430 + GFF3510 0.57 +0.2 89,431 - GFF3510 0.57 -0.0 89,431 - GFF3510 0.57 -0.2 89,431 - GFF3510 0.57 -0.5 89,431 - GFF3510 0.57 +0.3 89,432 + GFF3510 0.57 +0.4 89,433 - GFF3510 0.57 -0.7 89,465 + GFF3510 0.60 +0.1 89,465 + GFF3510 0.60 -0.5 89,465 + GFF3510 0.60 -2.5 89,465 + GFF3510 0.60 -0.5 89,466 - GFF3510 0.60 -0.7 89,466 - GFF3510 0.60 -1.0 89,466 - GFF3510 0.60 -1.1 89,466 - GFF3510 0.60 -0.9 89,466 - GFF3510 0.60 -0.6 89,466 - GFF3510 0.60 -0.7 89,470 - GFF3510 0.61 -0.2 89,550 + GFF3510 0.68 +0.3 89,551 - GFF3510 0.69 +0.7 89,784 - +1.1 89,871 + -0.3 90,586 + GFF3511 0.70 -0.1 90,586 + GFF3511 0.70 -0.4 90,586 + GFF3511 0.70 +0.3 90,587 - GFF3511 0.70 +1.2 90,587 - GFF3511 0.70 +1.5 90,587 - GFF3511 0.70 +0.4 90,800 - -0.3 90,894 + -0.9 90,894 + +0.4 90,894 + +0.1 90,895 - +0.1 90,895 - -1.0 90,895 - +1.8 90,895 - +0.1 91,169 + GFF3512 0.32 -0.2 91,169 + GFF3512 0.32 -0.5 91,169 + GFF3512 0.32 +1.3 91,169 + GFF3512 0.32 +0.5 91,170 - GFF3512 0.32 -1.4 91,170 - GFF3512 0.32 -1.2 91,170 - GFF3512 0.32 +0.1 91,170 - GFF3512 0.32 +0.6 91,170 - GFF3512 0.32 -0.6 91,383 - GFF3512 0.54 +1.1 91,557 + GFF3512 0.73 -0.4 91,557 + GFF3512 0.73 +0.6 91,558 - GFF3512 0.73 -0.2 91,558 - GFF3512 0.73 -0.8 91,558 - GFF3512 0.73 -0.9 91,558 - GFF3512 0.73 +0.9 91,646 + GFF3512 0.83 -0.3 91,647 - GFF3512 0.83 -0.2 91,817 - +0.3 91,868 + GFF3513 0.10 -1.4 91,868 + GFF3513 0.10 +0.4 91,869 - GFF3513 0.11 +0.3
Or see this region's nucleotide sequence