Strain Fitness in Pseudomonas sp. DMC3 around GFF3503

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3502 and GFF3503 are separated by 131 nucleotidesGFF3503 and GFF3504 are separated by 138 nucleotides GFF3502 - HTH-type transcriptional regulator NorG, at 73,809 to 75,218 GFF3502 GFF3503 - putative oxidoreductase YgfF, at 75,350 to 76,096 GFF3503 GFF3504 - putative signaling protein, at 76,235 to 78,316 GFF3504 Position (kb) 75 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 74.418 kb on + strand, within GFF3502at 74.418 kb on + strand, within GFF3502at 74.528 kb on + strand, within GFF3502at 74.659 kb on - strand, within GFF3502at 74.671 kb on - strand, within GFF3502at 74.671 kb on - strand, within GFF3502at 75.147 kb on + strandat 75.147 kb on + strandat 75.223 kb on + strandat 75.223 kb on + strandat 75.223 kb on + strandat 75.224 kb on - strandat 75.283 kb on + strandat 75.284 kb on - strandat 75.284 kb on - strandat 75.329 kb on + strandat 75.329 kb on + strandat 75.329 kb on + strandat 75.351 kb on + strandat 75.390 kb on + strandat 75.391 kb on - strandat 75.391 kb on - strandat 75.525 kb on + strand, within GFF3503at 75.525 kb on + strand, within GFF3503at 75.525 kb on + strand, within GFF3503at 75.526 kb on - strand, within GFF3503at 75.526 kb on - strand, within GFF3503at 75.532 kb on - strand, within GFF3503at 75.628 kb on - strand, within GFF3503at 75.636 kb on + strand, within GFF3503at 75.636 kb on + strand, within GFF3503at 75.897 kb on - strand, within GFF3503at 75.897 kb on - strand, within GFF3503at 75.999 kb on + strand, within GFF3503at 76.000 kb on - strand, within GFF3503at 76.017 kb on + strand, within GFF3503at 76.122 kb on + strandat 76.122 kb on + strandat 76.122 kb on + strandat 76.122 kb on + strandat 76.122 kb on + strandat 76.123 kb on - strandat 76.141 kb on + strandat 76.141 kb on + strandat 76.142 kb on - strandat 76.142 kb on - strandat 76.172 kb on + strandat 76.172 kb on + strandat 76.172 kb on + strandat 76.172 kb on + strandat 76.172 kb on + strandat 76.172 kb on + strandat 76.172 kb on + strandat 76.172 kb on + strandat 76.173 kb on - strandat 76.173 kb on - strandat 76.311 kb on + strandat 76.311 kb on + strandat 76.515 kb on + strand, within GFF3504at 76.515 kb on + strand, within GFF3504at 76.515 kb on + strand, within GFF3504at 76.516 kb on - strand, within GFF3504at 76.516 kb on - strand, within GFF3504at 76.516 kb on - strand, within GFF3504at 76.758 kb on + strand, within GFF3504at 76.759 kb on - strand, within GFF3504at 76.770 kb on + strand, within GFF3504at 76.771 kb on - strand, within GFF3504at 76.771 kb on - strand, within GFF3504at 76.771 kb on - strand, within GFF3504at 76.771 kb on - strand, within GFF3504at 76.956 kb on + strand, within GFF3504at 76.956 kb on + strand, within GFF3504at 76.957 kb on - strand, within GFF3504at 76.957 kb on - strand, within GFF3504at 77.059 kb on - strand, within GFF3504at 77.088 kb on + strand, within GFF3504at 77.088 kb on + strand, within GFF3504at 77.088 kb on + strand, within GFF3504at 77.088 kb on + strand, within GFF3504at 77.089 kb on - strand, within GFF3504at 77.089 kb on - strand, within GFF3504

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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74,418 + GFF3502 0.43 -0.1
74,418 + GFF3502 0.43 -0.0
74,528 + GFF3502 0.51 +1.1
74,659 - GFF3502 0.60 -0.9
74,671 - GFF3502 0.61 -0.2
74,671 - GFF3502 0.61 +0.3
75,147 + -0.2
75,147 + +1.7
75,223 + +0.6
75,223 + +1.2
75,223 + +0.8
75,224 - -0.4
75,283 + +0.9
75,284 - -0.8
75,284 - -0.9
75,329 + +0.1
75,329 + -0.7
75,329 + -1.0
75,351 + +0.3
75,390 + -0.4
75,391 - -0.1
75,391 - -1.1
75,525 + GFF3503 0.23 +0.9
75,525 + GFF3503 0.23 +0.5
75,525 + GFF3503 0.23 +0.8
75,526 - GFF3503 0.24 +0.3
75,526 - GFF3503 0.24 -0.3
75,532 - GFF3503 0.24 -1.1
75,628 - GFF3503 0.37 +0.2
75,636 + GFF3503 0.38 -0.0
75,636 + GFF3503 0.38 +0.9
75,897 - GFF3503 0.73 -0.1
75,897 - GFF3503 0.73 +0.5
75,999 + GFF3503 0.87 +0.9
76,000 - GFF3503 0.87 -0.9
76,017 + GFF3503 0.89 +0.9
76,122 + -0.7
76,122 + -0.1
76,122 + +0.0
76,122 + +0.1
76,122 + +1.4
76,123 - -0.9
76,141 + -1.5
76,141 + -1.4
76,142 - -2.2
76,142 - +1.1
76,172 + +0.6
76,172 + +0.0
76,172 + -0.2
76,172 + -0.3
76,172 + -0.2
76,172 + +1.9
76,172 + +1.2
76,172 + -0.8
76,173 - +0.6
76,173 - -0.2
76,311 + -0.4
76,311 + +1.1
76,515 + GFF3504 0.13 +0.1
76,515 + GFF3504 0.13 +0.3
76,515 + GFF3504 0.13 +0.4
76,516 - GFF3504 0.13 -3.0
76,516 - GFF3504 0.13 -0.3
76,516 - GFF3504 0.13 +0.5
76,758 + GFF3504 0.25 -0.5
76,759 - GFF3504 0.25 +0.0
76,770 + GFF3504 0.26 -0.5
76,771 - GFF3504 0.26 -0.8
76,771 - GFF3504 0.26 -1.6
76,771 - GFF3504 0.26 +0.7
76,771 - GFF3504 0.26 -2.5
76,956 + GFF3504 0.35 -0.0
76,956 + GFF3504 0.35 +0.0
76,957 - GFF3504 0.35 -1.1
76,957 - GFF3504 0.35 +0.3
77,059 - GFF3504 0.40 -0.6
77,088 + GFF3504 0.41 +1.3
77,088 + GFF3504 0.41 -1.1
77,088 + GFF3504 0.41 +0.3
77,088 + GFF3504 0.41 +0.0
77,089 - GFF3504 0.41 -1.2
77,089 - GFF3504 0.41 -1.2

Or see this region's nucleotide sequence