Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3477 and GFF3478 are separated by 241 nucleotides GFF3478 and GFF3479 overlap by 1 nucleotides GFF3479 and GFF3480 are separated by 86 nucleotides
GFF3477 - Methyl-accepting chemotaxis protein McpH, at 39,490 to 41,481
GFF3477
GFF3478 - hypothetical protein, at 41,723 to 42,169
GFF3478
GFF3479 - Inner membrane protein YqaA, at 42,169 to 42,603
GFF3479
GFF3480 - Putative aminoacrylate hydrolase RutD, at 42,690 to 43,736
GFF3480
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1 at 40.887 kb on + strand, within GFF3477 at 40.888 kb on - strand, within GFF3477 at 41.479 kb on + strand at 41.480 kb on - strand at 41.480 kb on - strand at 41.480 kb on - strand at 41.480 kb on - strand at 41.512 kb on + strand at 41.611 kb on + strand at 41.611 kb on + strand at 41.611 kb on + strand at 41.611 kb on + strand at 41.612 kb on - strand at 41.612 kb on - strand at 41.632 kb on + strand at 41.632 kb on + strand at 41.633 kb on - strand at 41.633 kb on - strand at 41.658 kb on + strand at 41.658 kb on + strand at 41.658 kb on + strand at 41.658 kb on + strand at 41.659 kb on - strand at 41.659 kb on - strand at 41.659 kb on - strand at 41.659 kb on - strand at 41.912 kb on - strand, within GFF3478 at 42.104 kb on + strand, within GFF3478 at 42.104 kb on + strand, within GFF3478 at 42.105 kb on - strand, within GFF3478 at 42.144 kb on + strand at 42.144 kb on + strand at 42.182 kb on - strand at 42.182 kb on - strand at 42.424 kb on + strand, within GFF3479 at 42.434 kb on - strand, within GFF3479 at 42.633 kb on - strand at 42.633 kb on - strand at 42.689 kb on + strand at 42.689 kb on + strand at 42.689 kb on + strand at 42.690 kb on - strand at 42.690 kb on - strand at 42.690 kb on - strand at 42.690 kb on - strand at 42.690 kb on - strand at 42.690 kb on - strand at 42.748 kb on + strand at 42.796 kb on - strand, within GFF3480 at 42.836 kb on + strand, within GFF3480 at 42.836 kb on + strand, within GFF3480 at 42.837 kb on - strand, within GFF3480 at 42.837 kb on - strand, within GFF3480 at 42.837 kb on - strand, within GFF3480 at 42.882 kb on + strand, within GFF3480 at 42.882 kb on + strand, within GFF3480 at 42.883 kb on - strand, within GFF3480 at 42.883 kb on - strand, within GFF3480 at 42.883 kb on - strand, within GFF3480 at 43.056 kb on + strand, within GFF3480 at 43.057 kb on - strand, within GFF3480 at 43.057 kb on - strand, within GFF3480 at 43.063 kb on - strand, within GFF3480 at 43.063 kb on - strand, within GFF3480
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 40,887 + GFF3477 0.70 -0.6 40,888 - GFF3477 0.70 -0.5 41,479 + +0.4 41,480 - +0.6 41,480 - +0.0 41,480 - +0.9 41,480 - +0.4 41,512 + -0.2 41,611 + -0.7 41,611 + +0.0 41,611 + +0.1 41,611 + +0.5 41,612 - -1.2 41,612 - -0.9 41,632 + -1.0 41,632 + -0.4 41,633 - -0.8 41,633 - +0.5 41,658 + -1.2 41,658 + +0.6 41,658 + +0.3 41,658 + +0.9 41,659 - +0.7 41,659 - +0.4 41,659 - -0.6 41,659 - -1.5 41,912 - GFF3478 0.42 +0.4 42,104 + GFF3478 0.85 +0.3 42,104 + GFF3478 0.85 +0.4 42,105 - GFF3478 0.85 -0.7 42,144 + -0.1 42,144 + -0.7 42,182 - -0.2 42,182 - +0.5 42,424 + GFF3479 0.59 -0.0 42,434 - GFF3479 0.61 -1.9 42,633 - -0.0 42,633 - -0.5 42,689 + +0.3 42,689 + -0.3 42,689 + -0.3 42,690 - -0.2 42,690 - +0.3 42,690 - +0.0 42,690 - +0.3 42,690 - +0.1 42,690 - -0.3 42,748 + -0.7 42,796 - GFF3480 0.10 -0.2 42,836 + GFF3480 0.14 +0.0 42,836 + GFF3480 0.14 -0.6 42,837 - GFF3480 0.14 +0.5 42,837 - GFF3480 0.14 -0.4 42,837 - GFF3480 0.14 -0.7 42,882 + GFF3480 0.18 -1.8 42,882 + GFF3480 0.18 +0.5 42,883 - GFF3480 0.18 -0.8 42,883 - GFF3480 0.18 -0.8 42,883 - GFF3480 0.18 -1.0 43,056 + GFF3480 0.35 +0.6 43,057 - GFF3480 0.35 -0.4 43,057 - GFF3480 0.35 +0.5 43,063 - GFF3480 0.36 -0.5 43,063 - GFF3480 0.36 -0.0
Or see this region's nucleotide sequence