Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3465 and GFF3466 are separated by 70 nucleotides GFF3466 and GFF3467 are separated by 153 nucleotides GFF3467 and GFF3468 are separated by 52 nucleotides
GFF3465 - hypothetical protein, at 21,632 to 26,476
GFF3465
GFF3466 - hypothetical protein, at 26,547 to 26,816
GFF3466
GFF3467 - hypothetical protein, at 26,970 to 27,992
GFF3467
GFF3468 - Acyl-homoserine lactone acylase PvdQ, at 28,045 to 30,384
GFF3468
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 26.010 kb on + strand at 26.011 kb on - strand at 26.011 kb on - strand at 26.084 kb on + strand at 26.085 kb on - strand at 26.137 kb on + strand at 26.137 kb on + strand at 26.137 kb on + strand at 26.137 kb on + strand at 26.138 kb on - strand at 26.138 kb on - strand at 26.157 kb on + strand at 26.157 kb on + strand at 26.157 kb on + strand at 26.157 kb on + strand at 26.158 kb on - strand at 26.158 kb on - strand at 26.158 kb on - strand at 26.158 kb on - strand at 26.191 kb on - strand at 26.249 kb on + strand at 26.250 kb on - strand at 26.270 kb on - strand at 26.538 kb on + strand at 26.539 kb on - strand at 26.539 kb on - strand at 26.568 kb on + strand at 26.568 kb on + strand at 26.568 kb on + strand at 26.569 kb on - strand at 26.569 kb on - strand at 26.569 kb on - strand at 26.569 kb on - strand at 26.668 kb on + strand, within GFF3466 at 26.668 kb on + strand, within GFF3466 at 26.669 kb on - strand, within GFF3466 at 26.669 kb on - strand, within GFF3466 at 26.680 kb on + strand, within GFF3466 at 26.681 kb on - strand, within GFF3466 at 26.831 kb on + strand at 26.831 kb on + strand at 26.831 kb on + strand at 26.832 kb on - strand at 26.832 kb on - strand at 26.837 kb on + strand at 26.837 kb on + strand at 26.838 kb on - strand at 26.838 kb on - strand at 26.840 kb on + strand at 26.840 kb on + strand at 26.840 kb on + strand at 26.840 kb on + strand at 26.840 kb on + strand at 26.840 kb on + strand at 26.840 kb on + strand at 26.840 kb on + strand at 26.841 kb on - strand at 26.841 kb on - strand at 26.841 kb on - strand at 26.841 kb on - strand at 26.841 kb on - strand at 26.841 kb on - strand at 26.841 kb on - strand at 26.841 kb on - strand at 26.882 kb on + strand at 26.883 kb on - strand at 26.901 kb on + strand at 26.901 kb on + strand at 26.902 kb on - strand at 26.902 kb on - strand at 26.902 kb on - strand at 26.943 kb on + strand at 26.944 kb on - strand at 27.000 kb on + strand at 27.001 kb on - strand at 27.001 kb on - strand at 27.001 kb on - strand at 27.330 kb on + strand, within GFF3467 at 27.331 kb on - strand, within GFF3467 at 27.331 kb on - strand, within GFF3467 at 27.340 kb on - strand, within GFF3467 at 27.340 kb on - strand, within GFF3467 at 27.429 kb on + strand, within GFF3467 at 27.429 kb on + strand, within GFF3467 at 27.430 kb on - strand, within GFF3467 at 27.430 kb on - strand, within GFF3467 at 27.430 kb on - strand, within GFF3467 at 27.567 kb on + strand, within GFF3467 at 27.567 kb on + strand, within GFF3467 at 27.567 kb on + strand, within GFF3467 at 27.567 kb on + strand, within GFF3467 at 27.567 kb on + strand, within GFF3467 at 27.567 kb on + strand, within GFF3467 at 27.567 kb on + strand, within GFF3467 at 27.567 kb on + strand, within GFF3467 at 27.568 kb on - strand, within GFF3467 at 27.568 kb on - strand, within GFF3467 at 27.568 kb on - strand, within GFF3467 at 27.568 kb on - strand, within GFF3467 at 27.568 kb on - strand, within GFF3467 at 27.568 kb on - strand, within GFF3467 at 27.568 kb on - strand, within GFF3467 at 27.691 kb on - strand, within GFF3467 at 27.691 kb on - strand, within GFF3467 at 27.691 kb on - strand, within GFF3467 at 27.715 kb on - strand, within GFF3467 at 27.725 kb on + strand, within GFF3467 at 27.805 kb on - strand, within GFF3467 at 27.805 kb on - strand, within GFF3467 at 27.867 kb on + strand, within GFF3467 at 27.868 kb on - strand, within GFF3467 at 27.868 kb on - strand, within GFF3467 at 27.868 kb on - strand, within GFF3467 at 28.184 kb on + strand at 28.271 kb on + strand at 28.271 kb on + strand at 28.271 kb on + strand at 28.271 kb on + strand at 28.271 kb on + strand at 28.271 kb on + strand at 28.271 kb on + strand at 28.272 kb on - strand at 28.272 kb on - strand at 28.334 kb on + strand, within GFF3468 at 28.334 kb on + strand, within GFF3468 at 28.335 kb on - strand, within GFF3468 at 28.335 kb on - strand, within GFF3468 at 28.745 kb on + strand, within GFF3468 at 28.745 kb on + strand, within GFF3468 at 28.883 kb on + strand, within GFF3468
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 26,010 + -0.6 26,011 - -0.6 26,011 - +0.4 26,084 + -0.5 26,085 - +0.5 26,137 + +0.1 26,137 + -0.4 26,137 + +0.6 26,137 + -0.4 26,138 - -1.2 26,138 - +0.4 26,157 + -0.2 26,157 + +0.6 26,157 + +0.4 26,157 + +1.9 26,158 - -0.1 26,158 - +0.2 26,158 - -0.9 26,158 - +0.8 26,191 - +0.6 26,249 + +0.3 26,250 - -0.9 26,270 - -0.7 26,538 + +0.3 26,539 - -0.2 26,539 - -0.2 26,568 + -0.6 26,568 + -0.3 26,568 + -0.1 26,569 - -0.0 26,569 - -0.1 26,569 - +0.0 26,569 - -0.0 26,668 + GFF3466 0.45 +1.1 26,668 + GFF3466 0.45 +1.1 26,669 - GFF3466 0.45 +0.4 26,669 - GFF3466 0.45 -1.7 26,680 + GFF3466 0.49 -2.5 26,681 - GFF3466 0.50 +1.6 26,831 + +0.0 26,831 + -0.9 26,831 + -0.1 26,832 - +0.7 26,832 - +0.8 26,837 + +0.9 26,837 + +0.2 26,838 - -0.1 26,838 - +0.7 26,840 + -0.4 26,840 + -0.8 26,840 + -0.3 26,840 + +0.8 26,840 + -0.1 26,840 + +0.1 26,840 + -0.2 26,840 + -1.1 26,841 - -0.6 26,841 - +1.0 26,841 - +0.4 26,841 - +0.5 26,841 - +0.2 26,841 - +0.0 26,841 - -0.9 26,841 - +0.3 26,882 + -0.1 26,883 - +0.0 26,901 + +0.8 26,901 + +0.6 26,902 - +1.1 26,902 - -3.1 26,902 - +0.8 26,943 + +0.1 26,944 - +0.7 27,000 + -0.6 27,001 - +0.1 27,001 - -0.5 27,001 - -1.2 27,330 + GFF3467 0.35 -0.5 27,331 - GFF3467 0.35 +0.1 27,331 - GFF3467 0.35 +0.5 27,340 - GFF3467 0.36 +0.3 27,340 - GFF3467 0.36 +1.2 27,429 + GFF3467 0.45 +1.1 27,429 + GFF3467 0.45 -0.4 27,430 - GFF3467 0.45 +0.1 27,430 - GFF3467 0.45 +0.7 27,430 - GFF3467 0.45 +1.4 27,567 + GFF3467 0.58 -0.1 27,567 + GFF3467 0.58 -0.1 27,567 + GFF3467 0.58 +0.3 27,567 + GFF3467 0.58 -0.1 27,567 + GFF3467 0.58 +0.7 27,567 + GFF3467 0.58 -0.1 27,567 + GFF3467 0.58 -0.2 27,567 + GFF3467 0.58 -0.4 27,568 - GFF3467 0.58 +1.3 27,568 - GFF3467 0.58 +1.5 27,568 - GFF3467 0.58 +0.9 27,568 - GFF3467 0.58 +0.4 27,568 - GFF3467 0.58 -0.3 27,568 - GFF3467 0.58 +0.6 27,568 - GFF3467 0.58 -1.1 27,691 - GFF3467 0.70 -0.1 27,691 - GFF3467 0.70 +1.2 27,691 - GFF3467 0.70 +0.6 27,715 - GFF3467 0.73 +1.1 27,725 + GFF3467 0.74 +0.5 27,805 - GFF3467 0.82 -0.1 27,805 - GFF3467 0.82 +0.7 27,867 + GFF3467 0.88 +1.1 27,868 - GFF3467 0.88 +0.9 27,868 - GFF3467 0.88 +0.3 27,868 - GFF3467 0.88 -0.8 28,184 + -0.9 28,271 + -0.6 28,271 + +0.5 28,271 + +0.9 28,271 + -0.5 28,271 + +0.5 28,271 + +0.7 28,271 + +0.1 28,272 - +0.5 28,272 - +1.4 28,334 + GFF3468 0.12 +0.4 28,334 + GFF3468 0.12 +0.2 28,335 - GFF3468 0.12 -0.0 28,335 - GFF3468 0.12 -2.5 28,745 + GFF3468 0.30 +0.8 28,745 + GFF3468 0.30 -0.4 28,883 + GFF3468 0.36 +1.4
Or see this region's nucleotide sequence