Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3339 and GFF3340 are separated by 1 nucleotides GFF3340 and GFF3341 are separated by 17 nucleotides GFF3341 and GFF3342 overlap by 4 nucleotides
GFF3339 - hypothetical protein, at 344,104 to 344,988
GFF3339
GFF3340 - hypothetical protein, at 344,990 to 345,874
GFF3340
GFF3341 - hypothetical protein, at 345,892 to 347,160
GFF3341
GFF3342 - hypothetical protein, at 347,157 to 348,347
GFF3342
Position (kb) 345
346
347
348 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 344.944 kb on + strand at 344.945 kb on - strand at 344.945 kb on - strand at 344.965 kb on + strand at 344.965 kb on + strand at 344.966 kb on - strand at 344.966 kb on - strand at 345.099 kb on + strand, within GFF3340 at 345.100 kb on - strand, within GFF3340 at 345.123 kb on + strand, within GFF3340 at 345.123 kb on + strand, within GFF3340 at 345.123 kb on + strand, within GFF3340 at 345.124 kb on - strand, within GFF3340 at 345.124 kb on - strand, within GFF3340 at 345.325 kb on - strand, within GFF3340 at 345.325 kb on - strand, within GFF3340 at 345.387 kb on - strand, within GFF3340 at 345.552 kb on + strand, within GFF3340 at 345.552 kb on + strand, within GFF3340 at 345.552 kb on + strand, within GFF3340 at 345.816 kb on + strand at 345.817 kb on - strand at 345.817 kb on - strand at 345.817 kb on - strand at 345.817 kb on - strand at 346.001 kb on + strand at 346.002 kb on - strand at 346.002 kb on - strand at 346.002 kb on - strand at 346.002 kb on - strand at 346.002 kb on - strand at 346.002 kb on - strand at 346.979 kb on + strand, within GFF3341 at 346.980 kb on - strand, within GFF3341 at 346.980 kb on - strand, within GFF3341 at 347.072 kb on + strand at 347.073 kb on - strand at 347.407 kb on + strand, within GFF3342 at 347.408 kb on - strand, within GFF3342 at 347.512 kb on + strand, within GFF3342 at 347.512 kb on + strand, within GFF3342 at 347.513 kb on - strand, within GFF3342 at 347.629 kb on + strand, within GFF3342 at 347.629 kb on + strand, within GFF3342 at 347.629 kb on + strand, within GFF3342 at 347.629 kb on + strand, within GFF3342 at 347.630 kb on - strand, within GFF3342 at 347.630 kb on - strand, within GFF3342 at 347.630 kb on - strand, within GFF3342 at 347.630 kb on - strand, within GFF3342 at 347.920 kb on + strand, within GFF3342 at 347.921 kb on - strand, within GFF3342 at 347.951 kb on + strand, within GFF3342 at 347.952 kb on - strand, within GFF3342 at 347.952 kb on - strand, within GFF3342 at 347.958 kb on - strand, within GFF3342 at 347.975 kb on + strand, within GFF3342 at 348.022 kb on + strand, within GFF3342
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 344,944 + -0.4 344,945 - -0.5 344,945 - -1.4 344,965 + -0.8 344,965 + +0.4 344,966 - -0.1 344,966 - +0.3 345,099 + GFF3340 0.12 -1.1 345,100 - GFF3340 0.12 +0.9 345,123 + GFF3340 0.15 -0.4 345,123 + GFF3340 0.15 +0.2 345,123 + GFF3340 0.15 -0.1 345,124 - GFF3340 0.15 +0.1 345,124 - GFF3340 0.15 +0.2 345,325 - GFF3340 0.38 -0.1 345,325 - GFF3340 0.38 +0.8 345,387 - GFF3340 0.45 -0.5 345,552 + GFF3340 0.64 -0.5 345,552 + GFF3340 0.64 -0.2 345,552 + GFF3340 0.64 +0.2 345,816 + +0.2 345,817 - -1.8 345,817 - -0.5 345,817 - +0.5 345,817 - +0.5 346,001 + +1.2 346,002 - -0.1 346,002 - -0.8 346,002 - -0.9 346,002 - +0.1 346,002 - -0.3 346,002 - +0.3 346,979 + GFF3341 0.86 -0.9 346,980 - GFF3341 0.86 -2.8 346,980 - GFF3341 0.86 -1.3 347,072 + +0.2 347,073 - -1.8 347,407 + GFF3342 0.21 -1.2 347,408 - GFF3342 0.21 -0.2 347,512 + GFF3342 0.30 -0.0 347,512 + GFF3342 0.30 +0.0 347,513 - GFF3342 0.30 -1.5 347,629 + GFF3342 0.40 -1.2 347,629 + GFF3342 0.40 +0.1 347,629 + GFF3342 0.40 -0.3 347,629 + GFF3342 0.40 +0.3 347,630 - GFF3342 0.40 -0.6 347,630 - GFF3342 0.40 +0.3 347,630 - GFF3342 0.40 -0.2 347,630 - GFF3342 0.40 -0.8 347,920 + GFF3342 0.64 -0.1 347,921 - GFF3342 0.64 -0.7 347,951 + GFF3342 0.67 +0.5 347,952 - GFF3342 0.67 +0.5 347,952 - GFF3342 0.67 -0.9 347,958 - GFF3342 0.67 +0.2 347,975 + GFF3342 0.69 -0.1 348,022 + GFF3342 0.73 +0.8
Or see this region's nucleotide sequence