Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3315 and GFF3316 are separated by 24 nucleotides GFF3316 and GFF3317 are separated by 241 nucleotides GFF3317 and GFF3318 are separated by 51 nucleotides
GFF3315 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 318,478 to 318,936
GFF3315
GFF3316 - 3-dehydroquinate dehydratase 1, at 318,961 to 319,416
GFF3316
GFF3317 - Methyl-accepting chemotaxis protein CtpL, at 319,658 to 321,604
GFF3317
GFF3318 - Regulator of RpoS, at 321,656 to 323,326
GFF3318
Position (kb) 319
320
321
322 Strain fitness (log2 ratio) -2
-1
0
1
2 at 319.613 kb on + strand at 319.613 kb on + strand at 319.614 kb on - strand at 319.654 kb on + strand at 319.654 kb on + strand at 319.654 kb on + strand at 319.654 kb on + strand at 319.654 kb on + strand at 319.654 kb on + strand at 319.684 kb on + strand at 319.684 kb on + strand at 320.027 kb on - strand, within GFF3317 at 320.512 kb on - strand, within GFF3317 at 320.512 kb on - strand, within GFF3317 at 320.754 kb on - strand, within GFF3317 at 320.936 kb on - strand, within GFF3317 at 320.936 kb on - strand, within GFF3317 at 321.165 kb on + strand, within GFF3317 at 321.165 kb on + strand, within GFF3317 at 321.166 kb on - strand, within GFF3317 at 321.186 kb on + strand, within GFF3317 at 321.426 kb on + strand at 321.427 kb on - strand at 321.480 kb on + strand at 321.480 kb on + strand at 321.498 kb on + strand at 321.498 kb on + strand at 321.498 kb on + strand at 321.498 kb on + strand at 321.498 kb on + strand at 321.499 kb on - strand at 321.499 kb on - strand at 321.629 kb on + strand at 321.630 kb on - strand at 321.630 kb on - strand at 321.657 kb on + strand at 321.657 kb on + strand at 321.657 kb on + strand at 321.665 kb on + strand at 321.665 kb on + strand at 321.911 kb on - strand, within GFF3318 at 321.967 kb on - strand, within GFF3318 at 322.173 kb on + strand, within GFF3318 at 322.173 kb on + strand, within GFF3318 at 322.173 kb on + strand, within GFF3318 at 322.174 kb on - strand, within GFF3318 at 322.174 kb on - strand, within GFF3318 at 322.174 kb on - strand, within GFF3318 at 322.174 kb on - strand, within GFF3318 at 322.174 kb on - strand, within GFF3318 at 322.347 kb on + strand, within GFF3318 at 322.347 kb on + strand, within GFF3318 at 322.347 kb on + strand, within GFF3318 at 322.348 kb on - strand, within GFF3318 at 322.348 kb on - strand, within GFF3318 at 322.369 kb on - strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.579 kb on + strand, within GFF3318 at 322.580 kb on - strand, within GFF3318 at 322.581 kb on + strand, within GFF3318 at 322.581 kb on + strand, within GFF3318 at 322.582 kb on - strand, within GFF3318 at 322.582 kb on - strand, within GFF3318
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 319,613 + +0.1 319,613 + +0.3 319,614 - -1.1 319,654 + +0.5 319,654 + +0.2 319,654 + -0.3 319,654 + -0.4 319,654 + +0.3 319,654 + -1.1 319,684 + -1.4 319,684 + +0.9 320,027 - GFF3317 0.19 +0.6 320,512 - GFF3317 0.44 -0.5 320,512 - GFF3317 0.44 +0.5 320,754 - GFF3317 0.56 +0.3 320,936 - GFF3317 0.66 +0.1 320,936 - GFF3317 0.66 +0.3 321,165 + GFF3317 0.77 +1.2 321,165 + GFF3317 0.77 +0.7 321,166 - GFF3317 0.77 +0.5 321,186 + GFF3317 0.78 -0.1 321,426 + -0.5 321,427 - -0.3 321,480 + -0.8 321,480 + +0.3 321,498 + -0.2 321,498 + -1.1 321,498 + -1.6 321,498 + -0.5 321,498 + -1.1 321,499 - +0.1 321,499 - -0.5 321,629 + -0.6 321,630 - -0.2 321,630 - -0.3 321,657 + +0.3 321,657 + -0.2 321,657 + +0.5 321,665 + -1.1 321,665 + -0.7 321,911 - GFF3318 0.15 -0.4 321,967 - GFF3318 0.19 -1.0 322,173 + GFF3318 0.31 +0.0 322,173 + GFF3318 0.31 -0.6 322,173 + GFF3318 0.31 -0.0 322,174 - GFF3318 0.31 +0.7 322,174 - GFF3318 0.31 -0.7 322,174 - GFF3318 0.31 +0.1 322,174 - GFF3318 0.31 +0.2 322,174 - GFF3318 0.31 +1.3 322,347 + GFF3318 0.41 +0.2 322,347 + GFF3318 0.41 -0.1 322,347 + GFF3318 0.41 +0.3 322,348 - GFF3318 0.41 +0.8 322,348 - GFF3318 0.41 +0.6 322,369 - GFF3318 0.43 +0.1 322,425 + GFF3318 0.46 -0.6 322,425 + GFF3318 0.46 +0.0 322,425 + GFF3318 0.46 -0.8 322,425 + GFF3318 0.46 -0.2 322,425 + GFF3318 0.46 -1.8 322,425 + GFF3318 0.46 +0.1 322,425 + GFF3318 0.46 -0.3 322,425 + GFF3318 0.46 +0.0 322,425 + GFF3318 0.46 -1.0 322,425 + GFF3318 0.46 -1.5 322,425 + GFF3318 0.46 +1.3 322,425 + GFF3318 0.46 +1.1 322,425 + GFF3318 0.46 +0.3 322,425 + GFF3318 0.46 +0.0 322,425 + GFF3318 0.46 +1.4 322,425 + GFF3318 0.46 -0.2 322,425 + GFF3318 0.46 -1.5 322,425 + GFF3318 0.46 -0.0 322,426 - GFF3318 0.46 -0.8 322,426 - GFF3318 0.46 -0.7 322,426 - GFF3318 0.46 -1.2 322,426 - GFF3318 0.46 +0.5 322,426 - GFF3318 0.46 +0.2 322,426 - GFF3318 0.46 -0.4 322,426 - GFF3318 0.46 +0.5 322,426 - GFF3318 0.46 -0.3 322,426 - GFF3318 0.46 +0.1 322,426 - GFF3318 0.46 +1.8 322,426 - GFF3318 0.46 +1.0 322,579 + GFF3318 0.55 -1.5 322,580 - GFF3318 0.55 +0.3 322,581 + GFF3318 0.55 -0.1 322,581 + GFF3318 0.55 -0.3 322,582 - GFF3318 0.55 +0.4 322,582 - GFF3318 0.55 +0.7
Or see this region's nucleotide sequence