Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3242 and GFF3243 are separated by 208 nucleotides GFF3243 and GFF3244 are separated by 68 nucleotides GFF3244 and GFF3245 are separated by 60 nucleotides GFF3245 and GFF3246 are separated by 192 nucleotides GFF3246 and GFF3247 are separated by 116 nucleotides
GFF3242 - putative protein, at 228,829 to 229,725
GFF3242
GFF3243 - hypothetical protein, at 229,934 to 230,122
GFF3243
GFF3244 - Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase, at 230,191 to 230,778
GFF3244
GFF3245 - hypothetical protein, at 230,839 to 230,928
GFF3245
GFF3246 - Azurin, at 231,121 to 231,564
GFF3246
GFF3247 - NH(3)-dependent NAD(+) synthetase, at 231,681 to 232,508
GFF3247
Position (kb) 230
231 Strain fitness (log2 ratio) -2
-1
0
1 at 229.213 kb on + strand, within GFF3242 at 229.213 kb on + strand, within GFF3242 at 229.213 kb on + strand, within GFF3242 at 229.213 kb on + strand, within GFF3242 at 229.213 kb on + strand, within GFF3242 at 229.213 kb on + strand, within GFF3242 at 229.213 kb on + strand, within GFF3242 at 229.214 kb on - strand, within GFF3242 at 229.214 kb on - strand, within GFF3242 at 229.214 kb on - strand, within GFF3242 at 229.214 kb on - strand, within GFF3242 at 229.214 kb on - strand, within GFF3242 at 229.214 kb on - strand, within GFF3242 at 229.214 kb on - strand, within GFF3242 at 229.453 kb on + strand, within GFF3242 at 229.453 kb on + strand, within GFF3242 at 229.453 kb on + strand, within GFF3242 at 229.453 kb on + strand, within GFF3242 at 229.658 kb on + strand at 229.844 kb on + strand at 229.845 kb on - strand at 229.845 kb on - strand at 229.845 kb on - strand at 229.845 kb on - strand at 229.845 kb on - strand at 229.850 kb on - strand at 230.106 kb on + strand at 230.106 kb on + strand at 230.106 kb on + strand at 230.107 kb on - strand at 230.163 kb on + strand at 230.164 kb on - strand at 230.175 kb on + strand at 230.328 kb on + strand, within GFF3244 at 230.328 kb on + strand, within GFF3244 at 230.329 kb on - strand, within GFF3244 at 230.660 kb on + strand, within GFF3244 at 230.784 kb on - strand at 230.840 kb on + strand at 230.840 kb on + strand at 230.948 kb on + strand at 230.948 kb on + strand at 230.964 kb on - strand at 230.964 kb on - strand at 230.990 kb on - strand at 231.011 kb on + strand at 231.012 kb on - strand at 231.048 kb on + strand at 231.048 kb on + strand at 231.049 kb on - strand at 231.086 kb on + strand at 231.394 kb on + strand, within GFF3246 at 231.395 kb on - strand, within GFF3246 at 231.395 kb on - strand, within GFF3246 at 231.485 kb on + strand, within GFF3246 at 231.485 kb on + strand, within GFF3246 at 231.486 kb on - strand, within GFF3246 at 231.562 kb on + strand at 231.562 kb on + strand at 231.563 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 229,213 + GFF3242 0.43 -0.7 229,213 + GFF3242 0.43 -1.2 229,213 + GFF3242 0.43 +0.7 229,213 + GFF3242 0.43 -0.2 229,213 + GFF3242 0.43 +0.7 229,213 + GFF3242 0.43 +0.5 229,213 + GFF3242 0.43 +0.6 229,214 - GFF3242 0.43 -1.1 229,214 - GFF3242 0.43 -0.5 229,214 - GFF3242 0.43 -1.4 229,214 - GFF3242 0.43 -0.1 229,214 - GFF3242 0.43 -0.5 229,214 - GFF3242 0.43 -0.9 229,214 - GFF3242 0.43 +0.5 229,453 + GFF3242 0.70 -1.3 229,453 + GFF3242 0.70 -0.2 229,453 + GFF3242 0.70 -0.8 229,453 + GFF3242 0.70 -1.3 229,658 + -0.1 229,844 + -0.4 229,845 - +0.3 229,845 - -0.4 229,845 - -0.5 229,845 - +0.6 229,845 - +0.2 229,850 - +0.4 230,106 + +0.6 230,106 + +0.3 230,106 + -0.5 230,107 - +0.8 230,163 + +0.1 230,164 - -0.4 230,175 + -0.3 230,328 + GFF3244 0.23 +0.5 230,328 + GFF3244 0.23 +0.9 230,329 - GFF3244 0.23 -0.2 230,660 + GFF3244 0.80 +1.0 230,784 - +0.3 230,840 + -0.1 230,840 + +0.4 230,948 + +0.3 230,948 + -1.0 230,964 - -0.7 230,964 - +0.5 230,990 - -0.3 231,011 + +0.1 231,012 - -1.0 231,048 + +0.5 231,048 + +0.1 231,049 - -1.1 231,086 + -2.1 231,394 + GFF3246 0.61 +0.4 231,395 - GFF3246 0.62 +0.1 231,395 - GFF3246 0.62 +0.2 231,485 + GFF3246 0.82 -0.6 231,485 + GFF3246 0.82 -0.2 231,486 - GFF3246 0.82 -0.3 231,562 + -0.1 231,562 + +0.2 231,563 - +1.2
Or see this region's nucleotide sequence