Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3201 and GFF3202 are separated by 3 nucleotides GFF3202 and GFF3203 are separated by 105 nucleotides GFF3203 and GFF3204 overlap by 1 nucleotides
GFF3201 - Motility protein A, at 169,475 to 170,326
GFF3201
GFF3202 - Motility protein B, at 170,330 to 171,370
GFF3202
GFF3203 - hypothetical protein, at 171,476 to 171,961
GFF3203
GFF3204 - hypothetical protein, at 171,961 to 172,920
GFF3204
Position (kb) 170
171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 169.354 kb on + strand at 169.380 kb on + strand at 169.380 kb on + strand at 169.381 kb on - strand at 169.381 kb on - strand at 169.381 kb on - strand at 169.382 kb on + strand at 169.382 kb on + strand at 169.382 kb on + strand at 169.383 kb on - strand at 169.408 kb on + strand at 169.408 kb on + strand at 169.409 kb on - strand at 169.409 kb on - strand at 169.436 kb on + strand at 169.437 kb on - strand at 169.455 kb on + strand at 169.455 kb on + strand at 169.456 kb on - strand at 169.463 kb on + strand at 169.463 kb on + strand at 169.464 kb on - strand at 169.464 kb on - strand at 169.464 kb on - strand at 169.464 kb on - strand at 169.464 kb on - strand at 169.464 kb on - strand at 169.464 kb on - strand at 169.464 kb on - strand at 169.470 kb on + strand at 169.470 kb on + strand at 169.470 kb on + strand at 169.470 kb on + strand at 169.471 kb on - strand at 169.471 kb on - strand at 169.471 kb on - strand at 169.471 kb on - strand at 169.471 kb on - strand at 169.471 kb on - strand at 169.474 kb on + strand at 169.474 kb on + strand at 169.475 kb on - strand at 169.475 kb on - strand at 169.475 kb on - strand at 169.475 kb on - strand at 169.504 kb on - strand at 169.527 kb on - strand at 169.628 kb on + strand, within GFF3201 at 169.628 kb on + strand, within GFF3201 at 169.628 kb on + strand, within GFF3201 at 169.695 kb on - strand, within GFF3201 at 169.809 kb on - strand, within GFF3201 at 169.856 kb on + strand, within GFF3201 at 169.856 kb on + strand, within GFF3201 at 169.856 kb on + strand, within GFF3201 at 169.856 kb on + strand, within GFF3201 at 169.925 kb on + strand, within GFF3201 at 169.925 kb on + strand, within GFF3201 at 169.926 kb on - strand, within GFF3201 at 170.099 kb on - strand, within GFF3201 at 170.123 kb on + strand, within GFF3201 at 170.186 kb on + strand, within GFF3201 at 170.187 kb on - strand, within GFF3201 at 170.187 kb on - strand, within GFF3201 at 170.324 kb on + strand at 170.325 kb on - strand at 170.338 kb on + strand at 170.339 kb on - strand at 170.339 kb on - strand at 170.473 kb on + strand, within GFF3202 at 170.473 kb on + strand, within GFF3202 at 170.474 kb on - strand, within GFF3202 at 170.505 kb on - strand, within GFF3202 at 170.546 kb on + strand, within GFF3202 at 170.547 kb on - strand, within GFF3202 at 170.547 kb on - strand, within GFF3202 at 170.858 kb on + strand, within GFF3202 at 170.859 kb on - strand, within GFF3202 at 170.859 kb on - strand, within GFF3202 at 170.949 kb on - strand, within GFF3202 at 171.065 kb on + strand, within GFF3202 at 171.368 kb on + strand at 171.368 kb on + strand at 171.368 kb on + strand at 171.443 kb on + strand at 171.447 kb on - strand at 171.537 kb on + strand, within GFF3203 at 171.537 kb on + strand, within GFF3203 at 171.537 kb on + strand, within GFF3203 at 171.538 kb on - strand, within GFF3203 at 171.538 kb on - strand, within GFF3203 at 171.606 kb on + strand, within GFF3203 at 171.666 kb on + strand, within GFF3203 at 171.666 kb on + strand, within GFF3203 at 171.666 kb on + strand, within GFF3203 at 171.666 kb on + strand, within GFF3203 at 171.667 kb on - strand, within GFF3203 at 171.667 kb on - strand, within GFF3203 at 171.667 kb on - strand, within GFF3203 at 171.700 kb on + strand, within GFF3203 at 171.700 kb on + strand, within GFF3203 at 171.700 kb on + strand, within GFF3203 at 171.701 kb on - strand, within GFF3203 at 171.701 kb on - strand, within GFF3203 at 171.817 kb on + strand, within GFF3203 at 171.863 kb on + strand, within GFF3203 at 171.863 kb on + strand, within GFF3203 at 171.864 kb on - strand, within GFF3203 at 171.873 kb on + strand, within GFF3203 at 171.949 kb on + strand at 171.995 kb on + strand at 171.995 kb on + strand at 171.995 kb on + strand at 171.996 kb on - strand at 172.043 kb on + strand at 172.043 kb on + strand at 172.046 kb on + strand at 172.046 kb on + strand at 172.046 kb on + strand at 172.046 kb on + strand at 172.046 kb on + strand at 172.047 kb on - strand at 172.047 kb on - strand at 172.047 kb on - strand at 172.047 kb on - strand at 172.047 kb on - strand at 172.154 kb on + strand, within GFF3204 at 172.154 kb on + strand, within GFF3204 at 172.155 kb on - strand, within GFF3204 at 172.328 kb on + strand, within GFF3204 at 172.329 kb on - strand, within GFF3204 at 172.329 kb on - strand, within GFF3204 at 172.359 kb on + strand, within GFF3204 at 172.359 kb on + strand, within GFF3204
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 169,354 + +0.1 169,380 + +1.3 169,380 + -0.0 169,381 - +0.0 169,381 - -1.1 169,381 - +0.2 169,382 + -1.3 169,382 + +0.4 169,382 + -0.0 169,383 - +1.0 169,408 + -0.3 169,408 + -0.1 169,409 - +0.8 169,409 - +1.9 169,436 + -0.2 169,437 - -0.3 169,455 + +1.4 169,455 + -1.6 169,456 - +0.7 169,463 + +0.1 169,463 + -0.3 169,464 - +0.5 169,464 - +1.3 169,464 - +0.3 169,464 - +0.8 169,464 - +0.9 169,464 - -0.4 169,464 - +0.3 169,464 - -0.2 169,470 + +0.1 169,470 + -0.2 169,470 + -0.1 169,470 + +0.2 169,471 - +0.3 169,471 - -0.5 169,471 - -0.0 169,471 - -0.9 169,471 - +0.2 169,471 - +0.4 169,474 + +1.0 169,474 + +0.5 169,475 - +0.4 169,475 - -0.9 169,475 - +0.2 169,475 - +0.1 169,504 - +0.1 169,527 - -0.6 169,628 + GFF3201 0.18 +0.8 169,628 + GFF3201 0.18 +0.5 169,628 + GFF3201 0.18 +0.2 169,695 - GFF3201 0.26 +1.1 169,809 - GFF3201 0.39 -1.4 169,856 + GFF3201 0.45 -0.4 169,856 + GFF3201 0.45 +1.0 169,856 + GFF3201 0.45 +0.2 169,856 + GFF3201 0.45 -0.3 169,925 + GFF3201 0.53 -0.3 169,925 + GFF3201 0.53 +1.2 169,926 - GFF3201 0.53 -0.5 170,099 - GFF3201 0.73 -0.4 170,123 + GFF3201 0.76 +0.6 170,186 + GFF3201 0.83 -0.1 170,187 - GFF3201 0.84 -0.3 170,187 - GFF3201 0.84 +0.5 170,324 + -0.6 170,325 - +0.4 170,338 + -0.0 170,339 - -0.2 170,339 - -0.2 170,473 + GFF3202 0.14 +0.3 170,473 + GFF3202 0.14 -0.8 170,474 - GFF3202 0.14 +0.4 170,505 - GFF3202 0.17 -1.0 170,546 + GFF3202 0.21 -0.7 170,547 - GFF3202 0.21 +0.8 170,547 - GFF3202 0.21 +0.1 170,858 + GFF3202 0.51 +0.3 170,859 - GFF3202 0.51 +0.3 170,859 - GFF3202 0.51 +0.1 170,949 - GFF3202 0.59 +0.8 171,065 + GFF3202 0.71 +1.3 171,368 + +0.7 171,368 + +0.5 171,368 + -1.4 171,443 + -0.9 171,447 - -0.4 171,537 + GFF3203 0.13 -0.3 171,537 + GFF3203 0.13 +0.3 171,537 + GFF3203 0.13 +0.1 171,538 - GFF3203 0.13 -0.5 171,538 - GFF3203 0.13 -0.8 171,606 + GFF3203 0.27 +0.8 171,666 + GFF3203 0.39 -0.0 171,666 + GFF3203 0.39 -2.4 171,666 + GFF3203 0.39 -0.9 171,666 + GFF3203 0.39 +0.7 171,667 - GFF3203 0.39 -0.8 171,667 - GFF3203 0.39 -1.0 171,667 - GFF3203 0.39 -0.6 171,700 + GFF3203 0.46 -0.8 171,700 + GFF3203 0.46 -0.6 171,700 + GFF3203 0.46 +0.5 171,701 - GFF3203 0.46 -0.1 171,701 - GFF3203 0.46 +0.6 171,817 + GFF3203 0.70 -0.9 171,863 + GFF3203 0.80 +1.1 171,863 + GFF3203 0.80 -0.7 171,864 - GFF3203 0.80 +0.0 171,873 + GFF3203 0.82 +0.7 171,949 + +0.5 171,995 + +0.2 171,995 + +0.4 171,995 + -0.4 171,996 - -0.1 172,043 + +0.6 172,043 + -0.2 172,046 + -0.8 172,046 + -0.7 172,046 + -2.2 172,046 + -0.4 172,046 + +0.5 172,047 - -0.2 172,047 - -1.5 172,047 - -1.1 172,047 - -0.3 172,047 - +0.9 172,154 + GFF3204 0.20 +0.4 172,154 + GFF3204 0.20 -0.6 172,155 - GFF3204 0.20 +0.2 172,328 + GFF3204 0.38 -0.1 172,329 - GFF3204 0.38 -0.2 172,329 - GFF3204 0.38 -0.6 172,359 + GFF3204 0.41 -0.6 172,359 + GFF3204 0.41 -0.3
Or see this region's nucleotide sequence