Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3195 and GFF3196 are separated by 134 nucleotides GFF3196 and GFF3197 are separated by 104 nucleotides
GFF3195 - hypothetical protein, at 161,254 to 162,765
GFF3195
GFF3196 - Phosphoserine phosphatase SerB2, at 162,900 to 164,114
GFF3196
GFF3197 - Cyclic-di-GMP receptor FimW, at 164,219 to 165,979
GFF3197
Position (kb) 162
163
164
165 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 162.004 kb on - strand, within GFF3195 at 162.004 kb on - strand, within GFF3195 at 162.804 kb on - strand at 162.806 kb on - strand at 162.806 kb on - strand at 162.864 kb on + strand at 162.920 kb on + strand at 162.921 kb on - strand at 163.155 kb on + strand, within GFF3196 at 163.155 kb on + strand, within GFF3196 at 163.263 kb on + strand, within GFF3196 at 163.264 kb on - strand, within GFF3196 at 163.264 kb on - strand, within GFF3196 at 163.764 kb on + strand, within GFF3196 at 163.764 kb on + strand, within GFF3196 at 163.803 kb on + strand, within GFF3196 at 163.804 kb on - strand, within GFF3196 at 164.076 kb on + strand at 164.076 kb on + strand at 164.076 kb on + strand at 164.076 kb on + strand at 164.077 kb on - strand at 164.077 kb on - strand at 164.077 kb on - strand at 164.123 kb on + strand at 164.124 kb on - strand at 164.220 kb on + strand at 164.220 kb on + strand at 164.275 kb on + strand at 164.412 kb on - strand, within GFF3197 at 164.412 kb on - strand, within GFF3197 at 164.412 kb on - strand, within GFF3197 at 164.412 kb on - strand, within GFF3197 at 164.462 kb on + strand, within GFF3197 at 164.466 kb on + strand, within GFF3197 at 164.657 kb on + strand, within GFF3197 at 164.695 kb on + strand, within GFF3197 at 164.695 kb on + strand, within GFF3197 at 164.695 kb on + strand, within GFF3197 at 164.696 kb on - strand, within GFF3197 at 164.696 kb on - strand, within GFF3197 at 164.696 kb on - strand, within GFF3197 at 164.718 kb on + strand, within GFF3197 at 164.719 kb on - strand, within GFF3197 at 164.772 kb on + strand, within GFF3197 at 164.806 kb on + strand, within GFF3197 at 164.806 kb on + strand, within GFF3197 at 164.806 kb on + strand, within GFF3197 at 164.806 kb on + strand, within GFF3197 at 164.807 kb on - strand, within GFF3197 at 164.807 kb on - strand, within GFF3197 at 164.807 kb on - strand, within GFF3197 at 164.807 kb on - strand, within GFF3197 at 164.938 kb on - strand, within GFF3197 at 164.938 kb on - strand, within GFF3197 at 165.050 kb on - strand, within GFF3197
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 162,004 - GFF3195 0.50 -0.0 162,004 - GFF3195 0.50 -0.0 162,804 - +0.2 162,806 - -1.9 162,806 - +1.1 162,864 + -0.2 162,920 + -1.8 162,921 - -0.5 163,155 + GFF3196 0.21 -1.4 163,155 + GFF3196 0.21 -2.2 163,263 + GFF3196 0.30 -3.7 163,264 - GFF3196 0.30 -1.5 163,264 - GFF3196 0.30 -4.3 163,764 + GFF3196 0.71 -4.2 163,764 + GFF3196 0.71 -0.5 163,803 + GFF3196 0.74 -2.2 163,804 - GFF3196 0.74 -1.6 164,076 + -3.3 164,076 + -3.7 164,076 + -3.2 164,076 + -3.3 164,077 - -0.5 164,077 - -1.9 164,077 - -2.7 164,123 + +1.3 164,124 - +0.6 164,220 + +0.1 164,220 + -0.2 164,275 + -0.0 164,412 - GFF3197 0.11 +1.1 164,412 - GFF3197 0.11 -0.2 164,412 - GFF3197 0.11 -0.3 164,412 - GFF3197 0.11 -0.2 164,462 + GFF3197 0.14 -0.3 164,466 + GFF3197 0.14 -0.9 164,657 + GFF3197 0.25 -1.5 164,695 + GFF3197 0.27 +0.5 164,695 + GFF3197 0.27 +0.3 164,695 + GFF3197 0.27 +0.0 164,696 - GFF3197 0.27 +0.7 164,696 - GFF3197 0.27 +0.9 164,696 - GFF3197 0.27 +0.7 164,718 + GFF3197 0.28 -0.1 164,719 - GFF3197 0.28 -1.0 164,772 + GFF3197 0.31 -0.4 164,806 + GFF3197 0.33 -0.1 164,806 + GFF3197 0.33 +0.9 164,806 + GFF3197 0.33 +0.1 164,806 + GFF3197 0.33 +0.2 164,807 - GFF3197 0.33 -1.3 164,807 - GFF3197 0.33 -0.7 164,807 - GFF3197 0.33 -0.6 164,807 - GFF3197 0.33 -0.8 164,938 - GFF3197 0.41 -0.0 164,938 - GFF3197 0.41 -0.0 165,050 - GFF3197 0.47 -0.0
Or see this region's nucleotide sequence