Strain Fitness in Pseudomonas sp. DMC3 around GFF3101

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3100 and GFF3101 are separated by 10 nucleotidesGFF3101 and GFF3102 are separated by 351 nucleotides GFF3100 - 3-dehydroquinate synthase, at 43,663 to 44,763 GFF3100 GFF3101 - Cell division protein DamX, at 44,774 to 46,360 GFF3101 GFF3102 - Glutamate synthase [NADPH] large chain, at 46,712 to 51,157 GFF3102 Position (kb) 44 45 46 47Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 44.734 kb on + strandat 44.754 kb on + strandat 44.755 kb on - strandat 44.755 kb on - strandat 44.761 kb on + strandat 44.779 kb on + strandat 44.780 kb on - strandat 44.780 kb on - strandat 44.780 kb on - strandat 44.780 kb on - strandat 44.780 kb on - strandat 44.821 kb on - strandat 44.915 kb on + strandat 44.999 kb on - strand, within GFF3101at 45.155 kb on + strand, within GFF3101at 45.155 kb on + strand, within GFF3101at 45.156 kb on - strand, within GFF3101at 45.156 kb on - strand, within GFF3101at 45.156 kb on - strand, within GFF3101at 45.338 kb on + strand, within GFF3101at 45.338 kb on + strand, within GFF3101at 45.339 kb on - strand, within GFF3101at 45.363 kb on - strand, within GFF3101at 45.431 kb on - strand, within GFF3101at 45.535 kb on + strand, within GFF3101at 45.536 kb on - strand, within GFF3101at 45.564 kb on + strand, within GFF3101at 45.564 kb on + strand, within GFF3101at 45.564 kb on + strand, within GFF3101at 45.704 kb on - strand, within GFF3101at 46.085 kb on + strand, within GFF3101at 46.086 kb on - strand, within GFF3101at 46.109 kb on + strand, within GFF3101at 46.109 kb on + strand, within GFF3101at 46.109 kb on + strand, within GFF3101at 46.109 kb on + strand, within GFF3101at 46.109 kb on + strand, within GFF3101at 46.109 kb on + strand, within GFF3101at 46.109 kb on + strand, within GFF3101at 46.109 kb on + strand, within GFF3101at 46.110 kb on - strand, within GFF3101at 46.110 kb on - strand, within GFF3101at 46.110 kb on - strand, within GFF3101at 46.110 kb on - strand, within GFF3101at 46.110 kb on - strand, within GFF3101at 46.110 kb on - strand, within GFF3101at 46.110 kb on - strand, within GFF3101at 46.187 kb on + strand, within GFF3101at 46.187 kb on + strand, within GFF3101at 46.187 kb on + strand, within GFF3101at 46.187 kb on + strand, within GFF3101at 46.188 kb on - strand, within GFF3101at 46.220 kb on + strandat 46.221 kb on - strandat 46.233 kb on - strandat 46.464 kb on + strandat 46.464 kb on + strandat 46.465 kb on - strandat 46.597 kb on + strandat 46.597 kb on + strandat 46.597 kb on + strandat 46.598 kb on - strandat 46.598 kb on - strandat 46.598 kb on - strandat 46.598 kb on - strandat 46.634 kb on - strandat 46.727 kb on + strandat 46.727 kb on + strandat 46.727 kb on + strandat 46.728 kb on - strandat 46.728 kb on - strandat 46.728 kb on - strandat 46.750 kb on + strandat 46.770 kb on + strandat 46.770 kb on + strandat 46.770 kb on + strandat 46.771 kb on - strandat 46.771 kb on - strandat 46.771 kb on - strandat 46.771 kb on - strandat 46.778 kb on - strandat 46.799 kb on - strandat 46.952 kb on - strandat 46.964 kb on + strandat 46.964 kb on + strandat 46.964 kb on + strandat 46.965 kb on - strandat 47.145 kb on - strandat 47.145 kb on - strandat 47.145 kb on - strandat 47.243 kb on + strand, within GFF3102at 47.243 kb on + strand, within GFF3102at 47.244 kb on - strand, within GFF3102at 47.244 kb on - strand, within GFF3102at 47.276 kb on + strand, within GFF3102at 47.276 kb on + strand, within GFF3102at 47.276 kb on + strand, within GFF3102at 47.276 kb on + strand, within GFF3102at 47.276 kb on + strand, within GFF3102at 47.276 kb on + strand, within GFF3102at 47.276 kb on + strand, within GFF3102at 47.277 kb on - strand, within GFF3102at 47.277 kb on - strand, within GFF3102at 47.277 kb on - strand, within GFF3102at 47.277 kb on - strand, within GFF3102at 47.277 kb on - strand, within GFF3102at 47.277 kb on - strand, within GFF3102at 47.277 kb on - strand, within GFF3102at 47.277 kb on - strand, within GFF3102at 47.279 kb on - strand, within GFF3102at 47.279 kb on - strand, within GFF3102

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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44,734 + +0.3
44,754 + -1.0
44,755 - +0.3
44,755 - -0.6
44,761 + -0.0
44,779 + -0.5
44,780 - +0.1
44,780 - +1.1
44,780 - +1.2
44,780 - +0.7
44,780 - +1.1
44,821 - -0.0
44,915 + +1.4
44,999 - GFF3101 0.14 +0.3
45,155 + GFF3101 0.24 +0.2
45,155 + GFF3101 0.24 +0.7
45,156 - GFF3101 0.24 -0.0
45,156 - GFF3101 0.24 -0.6
45,156 - GFF3101 0.24 +0.2
45,338 + GFF3101 0.36 +0.2
45,338 + GFF3101 0.36 -0.0
45,339 - GFF3101 0.36 +0.6
45,363 - GFF3101 0.37 +0.3
45,431 - GFF3101 0.41 -0.8
45,535 + GFF3101 0.48 -0.6
45,536 - GFF3101 0.48 +0.9
45,564 + GFF3101 0.50 +1.2
45,564 + GFF3101 0.50 +1.5
45,564 + GFF3101 0.50 -0.2
45,704 - GFF3101 0.59 +0.1
46,085 + GFF3101 0.83 -0.5
46,086 - GFF3101 0.83 +0.2
46,109 + GFF3101 0.84 +0.0
46,109 + GFF3101 0.84 -0.1
46,109 + GFF3101 0.84 +0.9
46,109 + GFF3101 0.84 -0.3
46,109 + GFF3101 0.84 +0.2
46,109 + GFF3101 0.84 -0.0
46,109 + GFF3101 0.84 -0.2
46,109 + GFF3101 0.84 +0.2
46,110 - GFF3101 0.84 +0.7
46,110 - GFF3101 0.84 +0.0
46,110 - GFF3101 0.84 +0.8
46,110 - GFF3101 0.84 -0.9
46,110 - GFF3101 0.84 -0.0
46,110 - GFF3101 0.84 +2.0
46,110 - GFF3101 0.84 +0.4
46,187 + GFF3101 0.89 +1.8
46,187 + GFF3101 0.89 +1.0
46,187 + GFF3101 0.89 +1.0
46,187 + GFF3101 0.89 -1.0
46,188 - GFF3101 0.89 +0.5
46,220 + +0.1
46,221 - -0.3
46,233 - +0.7
46,464 + +0.2
46,464 + -0.6
46,465 - +0.1
46,597 + +1.0
46,597 + +1.8
46,597 + -0.2
46,598 - -0.0
46,598 - -2.5
46,598 - -0.9
46,598 - -1.0
46,634 - -2.9
46,727 + -2.5
46,727 + -3.3
46,727 + -5.1
46,728 - -2.0
46,728 - -1.3
46,728 - -2.7
46,750 + -2.6
46,770 + -3.7
46,770 + -0.5
46,770 + -0.6
46,771 - -3.4
46,771 - -2.6
46,771 - -2.2
46,771 - -2.9
46,778 - -1.8
46,799 - -1.0
46,952 - -3.4
46,964 + -1.9
46,964 + -4.0
46,964 + -2.0
46,965 - -3.6
47,145 - -4.0
47,145 - -2.7
47,145 - -2.6
47,243 + GFF3102 0.12 -2.6
47,243 + GFF3102 0.12 -2.1
47,244 - GFF3102 0.12 -3.8
47,244 - GFF3102 0.12 -1.0
47,276 + GFF3102 0.13 -1.6
47,276 + GFF3102 0.13 -2.2
47,276 + GFF3102 0.13 -2.4
47,276 + GFF3102 0.13 -3.4
47,276 + GFF3102 0.13 -1.5
47,276 + GFF3102 0.13 -2.7
47,276 + GFF3102 0.13 -2.8
47,277 - GFF3102 0.13 -4.5
47,277 - GFF3102 0.13 -1.8
47,277 - GFF3102 0.13 -1.6
47,277 - GFF3102 0.13 -2.6
47,277 - GFF3102 0.13 -3.1
47,277 - GFF3102 0.13 -1.5
47,277 - GFF3102 0.13 -3.2
47,277 - GFF3102 0.13 -3.0
47,279 - GFF3102 0.13 -1.9
47,279 - GFF3102 0.13 -4.1

Or see this region's nucleotide sequence