Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3055 and GFF3056 overlap by 4 nucleotides GFF3056 and GFF3057 overlap by 4 nucleotides GFF3057 and GFF3058 are separated by 76 nucleotides
GFF3055 - Vitamin B12-binding protein, at 457,244 to 458,257
GFF3055
GFF3056 - putative siderophore transport system permease protein YfhA, at 458,254 to 459,270
GFF3056
GFF3057 - Iron(3+)-hydroxamate import ATP-binding protein FhuC, at 459,267 to 460,031
GFF3057
GFF3058 - 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase, at 460,108 to 462,396
GFF3058
Position (kb) 458
459
460 Strain fitness (log2 ratio) -1
0
1
2 at 457.415 kb on + strand, within GFF3055 at 457.481 kb on + strand, within GFF3055 at 457.481 kb on + strand, within GFF3055 at 457.482 kb on - strand, within GFF3055 at 457.482 kb on - strand, within GFF3055 at 457.482 kb on - strand, within GFF3055 at 457.482 kb on - strand, within GFF3055 at 457.482 kb on - strand, within GFF3055 at 457.645 kb on + strand, within GFF3055 at 457.645 kb on + strand, within GFF3055 at 457.646 kb on - strand, within GFF3055 at 457.649 kb on + strand, within GFF3055 at 457.649 kb on + strand, within GFF3055 at 457.649 kb on + strand, within GFF3055 at 457.649 kb on + strand, within GFF3055 at 457.650 kb on - strand, within GFF3055 at 457.650 kb on - strand, within GFF3055 at 457.650 kb on - strand, within GFF3055 at 457.736 kb on + strand, within GFF3055 at 457.736 kb on + strand, within GFF3055 at 458.396 kb on - strand, within GFF3056 at 458.435 kb on - strand, within GFF3056 at 458.536 kb on + strand, within GFF3056 at 458.548 kb on - strand, within GFF3056 at 459.492 kb on - strand, within GFF3057 at 459.833 kb on + strand, within GFF3057 at 459.833 kb on + strand, within GFF3057 at 459.833 kb on + strand, within GFF3057 at 459.952 kb on + strand, within GFF3057 at 459.953 kb on - strand, within GFF3057 at 459.956 kb on + strand at 459.956 kb on + strand at 459.956 kb on + strand at 459.956 kb on + strand at 459.957 kb on - strand at 459.957 kb on - strand at 459.981 kb on + strand at 459.982 kb on - strand at 460.013 kb on - strand at 460.041 kb on - strand at 460.084 kb on + strand at 460.084 kb on + strand at 460.084 kb on + strand at 460.084 kb on + strand at 460.088 kb on + strand at 460.088 kb on + strand at 460.088 kb on + strand at 460.089 kb on - strand at 460.089 kb on - strand at 460.089 kb on - strand at 460.089 kb on - strand at 460.101 kb on + strand at 460.101 kb on + strand at 460.233 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 457,415 + GFF3055 0.17 +0.3 457,481 + GFF3055 0.23 -1.2 457,481 + GFF3055 0.23 -1.4 457,482 - GFF3055 0.23 -1.0 457,482 - GFF3055 0.23 +0.6 457,482 - GFF3055 0.23 +0.4 457,482 - GFF3055 0.23 -0.4 457,482 - GFF3055 0.23 -0.7 457,645 + GFF3055 0.40 -1.5 457,645 + GFF3055 0.40 -0.1 457,646 - GFF3055 0.40 -0.9 457,649 + GFF3055 0.40 +1.0 457,649 + GFF3055 0.40 -1.3 457,649 + GFF3055 0.40 +0.8 457,649 + GFF3055 0.40 +0.4 457,650 - GFF3055 0.40 +0.2 457,650 - GFF3055 0.40 -0.5 457,650 - GFF3055 0.40 -0.5 457,736 + GFF3055 0.49 +1.8 457,736 + GFF3055 0.49 +0.6 458,396 - GFF3056 0.14 -0.5 458,435 - GFF3056 0.18 -0.9 458,536 + GFF3056 0.28 +1.0 458,548 - GFF3056 0.29 +1.0 459,492 - GFF3057 0.29 -0.6 459,833 + GFF3057 0.74 +0.4 459,833 + GFF3057 0.74 -0.0 459,833 + GFF3057 0.74 -1.0 459,952 + GFF3057 0.90 -0.2 459,953 - GFF3057 0.90 -0.7 459,956 + -0.3 459,956 + +0.4 459,956 + -0.3 459,956 + +0.6 459,957 - -1.1 459,957 - -0.9 459,981 + +0.1 459,982 - +0.3 460,013 - +0.1 460,041 - -0.2 460,084 + -0.2 460,084 + +0.3 460,084 + +0.4 460,084 + +0.3 460,088 + -0.7 460,088 + +0.6 460,088 + +1.1 460,089 - -0.3 460,089 - -0.9 460,089 - +0.5 460,089 - -0.5 460,101 + -1.0 460,101 + +0.3 460,233 + +0.2
Or see this region's nucleotide sequence