Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2991 and GFF2992 overlap by 4 nucleotides GFF2992 and GFF2993 are separated by 8 nucleotides
GFF2991 - hypothetical protein, at 375,494 to 376,615
GFF2991
GFF2992 - Type II secretion system protein K, at 376,612 to 377,571
GFF2992
GFF2993 - Type II secretion system protein G, at 377,580 to 378,047
GFF2993
Position (kb) 376
377
378 Strain fitness (log2 ratio) -1
0
1
2 at 375.688 kb on - strand, within GFF2991 at 375.743 kb on + strand, within GFF2991 at 375.921 kb on + strand, within GFF2991 at 375.922 kb on - strand, within GFF2991 at 376.564 kb on + strand at 376.718 kb on - strand, within GFF2992 at 376.877 kb on + strand, within GFF2992 at 376.947 kb on - strand, within GFF2992 at 376.947 kb on - strand, within GFF2992 at 377.581 kb on + strand at 377.581 kb on + strand at 377.582 kb on - strand at 377.582 kb on - strand at 377.582 kb on - strand at 377.654 kb on + strand, within GFF2993 at 377.655 kb on - strand, within GFF2993 at 377.686 kb on + strand, within GFF2993 at 377.692 kb on + strand, within GFF2993 at 377.806 kb on + strand, within GFF2993 at 377.807 kb on - strand, within GFF2993 at 377.827 kb on + strand, within GFF2993 at 377.828 kb on - strand, within GFF2993 at 377.828 kb on - strand, within GFF2993 at 377.858 kb on + strand, within GFF2993 at 377.972 kb on + strand, within GFF2993 at 377.973 kb on - strand, within GFF2993 at 377.973 kb on - strand, within GFF2993 at 377.973 kb on - strand, within GFF2993 at 377.987 kb on + strand, within GFF2993 at 377.987 kb on + strand, within GFF2993 at 377.991 kb on + strand, within GFF2993 at 377.991 kb on + strand, within GFF2993 at 377.991 kb on + strand, within GFF2993 at 377.992 kb on - strand, within GFF2993 at 377.992 kb on - strand, within GFF2993 at 377.992 kb on - strand, within GFF2993 at 378.099 kb on + strand at 378.100 kb on - strand at 378.100 kb on - strand at 378.100 kb on - strand at 378.100 kb on - strand at 378.100 kb on - strand at 378.160 kb on + strand at 378.195 kb on + strand at 378.195 kb on + strand at 378.195 kb on + strand at 378.195 kb on + strand at 378.195 kb on + strand at 378.196 kb on - strand at 378.284 kb on + strand at 378.312 kb on + strand at 378.312 kb on + strand at 378.313 kb on - strand at 378.313 kb on - strand at 378.436 kb on - strand at 378.436 kb on - strand at 378.436 kb on - strand at 378.436 kb on - strand at 378.436 kb on - strand at 378.504 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 375,688 - GFF2991 0.17 -0.1 375,743 + GFF2991 0.22 -1.3 375,921 + GFF2991 0.38 -0.2 375,922 - GFF2991 0.38 +1.5 376,564 + -0.0 376,718 - GFF2992 0.11 -0.1 376,877 + GFF2992 0.28 +1.3 376,947 - GFF2992 0.35 -0.1 376,947 - GFF2992 0.35 +0.8 377,581 + -0.1 377,581 + +0.9 377,582 - -0.9 377,582 - +0.2 377,582 - -0.9 377,654 + GFF2993 0.16 -0.1 377,655 - GFF2993 0.16 +0.6 377,686 + GFF2993 0.23 +1.8 377,692 + GFF2993 0.24 -0.1 377,806 + GFF2993 0.48 -0.7 377,807 - GFF2993 0.49 -1.5 377,827 + GFF2993 0.53 +0.1 377,828 - GFF2993 0.53 -0.0 377,828 - GFF2993 0.53 -0.6 377,858 + GFF2993 0.59 +0.6 377,972 + GFF2993 0.84 -0.2 377,973 - GFF2993 0.84 -0.3 377,973 - GFF2993 0.84 -0.6 377,973 - GFF2993 0.84 -0.2 377,987 + GFF2993 0.87 +0.9 377,987 + GFF2993 0.87 -0.1 377,991 + GFF2993 0.88 -0.9 377,991 + GFF2993 0.88 +0.9 377,991 + GFF2993 0.88 -0.3 377,992 - GFF2993 0.88 -0.4 377,992 - GFF2993 0.88 +0.1 377,992 - GFF2993 0.88 +1.6 378,099 + -0.7 378,100 - +0.1 378,100 - -1.0 378,100 - +0.1 378,100 - +0.6 378,100 - -0.2 378,160 + -1.0 378,195 + -0.5 378,195 + -0.6 378,195 + -1.6 378,195 + +0.4 378,195 + +0.3 378,196 - -0.9 378,284 + +0.0 378,312 + +0.7 378,312 + +1.0 378,313 - -0.3 378,313 - -0.0 378,436 - +0.2 378,436 - +0.5 378,436 - -0.6 378,436 - -0.2 378,436 - +0.1 378,504 - -0.5
Or see this region's nucleotide sequence