Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2890 and GFF2891 are separated by 265 nucleotides GFF2891 and GFF2892 are separated by 118 nucleotides
GFF2890 - Sensor histidine kinase RcsC, at 254,710 to 258,183
GFF2890
GFF2891 - Sensor kinase CckA, at 258,449 to 258,808
GFF2891
GFF2892 - hypothetical protein, at 258,927 to 260,231
GFF2892
Position (kb) 258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 257.534 kb on + strand, within GFF2890 at 257.534 kb on + strand, within GFF2890 at 257.535 kb on - strand, within GFF2890 at 257.535 kb on - strand, within GFF2890 at 257.535 kb on - strand, within GFF2890 at 257.573 kb on + strand, within GFF2890 at 257.573 kb on + strand, within GFF2890 at 257.573 kb on + strand, within GFF2890 at 257.573 kb on + strand, within GFF2890 at 257.573 kb on + strand, within GFF2890 at 257.573 kb on + strand, within GFF2890 at 257.574 kb on - strand, within GFF2890 at 257.574 kb on - strand, within GFF2890 at 257.574 kb on - strand, within GFF2890 at 257.612 kb on + strand, within GFF2890 at 257.612 kb on + strand, within GFF2890 at 257.613 kb on - strand, within GFF2890 at 257.790 kb on + strand, within GFF2890 at 257.790 kb on + strand, within GFF2890 at 257.791 kb on - strand, within GFF2890 at 257.791 kb on - strand, within GFF2890 at 257.791 kb on - strand, within GFF2890 at 257.801 kb on + strand, within GFF2890 at 257.886 kb on + strand at 257.886 kb on + strand at 257.886 kb on + strand at 257.886 kb on + strand at 257.886 kb on + strand at 257.886 kb on + strand at 257.887 kb on - strand at 257.887 kb on - strand at 257.887 kb on - strand at 257.887 kb on - strand at 258.065 kb on + strand at 258.065 kb on + strand at 258.065 kb on + strand at 258.065 kb on + strand at 258.065 kb on + strand at 258.065 kb on + strand at 258.066 kb on - strand at 258.066 kb on - strand at 258.066 kb on - strand at 258.066 kb on - strand at 258.066 kb on - strand at 258.066 kb on - strand at 258.346 kb on + strand at 258.368 kb on + strand at 258.379 kb on + strand at 258.380 kb on - strand at 258.380 kb on - strand at 258.469 kb on + strand at 258.469 kb on + strand at 258.480 kb on + strand at 258.480 kb on + strand at 258.596 kb on - strand, within GFF2891 at 258.777 kb on + strand at 258.806 kb on + strand at 258.806 kb on + strand at 258.806 kb on + strand at 258.806 kb on + strand at 258.807 kb on - strand at 258.821 kb on - strand at 258.967 kb on - strand at 258.967 kb on - strand at 259.121 kb on - strand, within GFF2892 at 259.121 kb on - strand, within GFF2892 at 259.434 kb on + strand, within GFF2892 at 259.694 kb on + strand, within GFF2892 at 259.694 kb on + strand, within GFF2892 at 259.694 kb on + strand, within GFF2892 at 259.694 kb on + strand, within GFF2892 at 259.694 kb on + strand, within GFF2892 at 259.694 kb on + strand, within GFF2892 at 259.694 kb on + strand, within GFF2892 at 259.695 kb on - strand, within GFF2892 at 259.695 kb on - strand, within GFF2892 at 259.695 kb on - strand, within GFF2892 at 259.695 kb on - strand, within GFF2892 at 259.695 kb on - strand, within GFF2892 at 259.695 kb on - strand, within GFF2892 at 259.695 kb on - strand, within GFF2892 at 259.695 kb on - strand, within GFF2892 at 259.695 kb on - strand, within GFF2892 at 259.695 kb on - strand, within GFF2892 at 259.698 kb on + strand, within GFF2892 at 259.698 kb on + strand, within GFF2892 at 259.698 kb on + strand, within GFF2892 at 259.699 kb on - strand, within GFF2892 at 259.699 kb on - strand, within GFF2892 at 259.707 kb on + strand, within GFF2892 at 259.708 kb on - strand, within GFF2892
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 257,534 + GFF2890 0.81 +0.1 257,534 + GFF2890 0.81 +0.6 257,535 - GFF2890 0.81 -0.1 257,535 - GFF2890 0.81 +1.5 257,535 - GFF2890 0.81 -0.1 257,573 + GFF2890 0.82 -0.8 257,573 + GFF2890 0.82 +0.3 257,573 + GFF2890 0.82 -0.5 257,573 + GFF2890 0.82 -0.3 257,573 + GFF2890 0.82 -1.1 257,573 + GFF2890 0.82 +0.7 257,574 - GFF2890 0.82 +0.4 257,574 - GFF2890 0.82 +0.4 257,574 - GFF2890 0.82 +1.1 257,612 + GFF2890 0.84 +0.1 257,612 + GFF2890 0.84 -0.3 257,613 - GFF2890 0.84 -1.0 257,790 + GFF2890 0.89 +0.4 257,790 + GFF2890 0.89 -0.5 257,791 - GFF2890 0.89 +0.8 257,791 - GFF2890 0.89 -0.2 257,791 - GFF2890 0.89 -1.2 257,801 + GFF2890 0.89 -1.1 257,886 + +0.6 257,886 + +0.3 257,886 + +0.7 257,886 + -0.7 257,886 + +1.1 257,886 + -1.0 257,887 - -0.5 257,887 - +0.4 257,887 - -0.1 257,887 - +1.0 258,065 + +0.2 258,065 + +0.1 258,065 + -0.2 258,065 + -1.0 258,065 + -0.8 258,065 + +0.5 258,066 - -0.5 258,066 - +0.2 258,066 - -0.0 258,066 - -1.0 258,066 - -0.8 258,066 - +0.5 258,346 + -1.0 258,368 + -0.2 258,379 + -0.0 258,380 - -0.9 258,380 - -0.7 258,469 + -0.1 258,469 + -1.1 258,480 + -0.4 258,480 + +2.1 258,596 - GFF2891 0.41 -0.8 258,777 + +1.3 258,806 + -1.9 258,806 + -1.2 258,806 + -0.9 258,806 + -0.1 258,807 - -0.2 258,821 - -0.4 258,967 - -0.5 258,967 - -0.9 259,121 - GFF2892 0.15 +0.1 259,121 - GFF2892 0.15 +0.3 259,434 + GFF2892 0.39 +1.5 259,694 + GFF2892 0.59 +1.3 259,694 + GFF2892 0.59 +0.0 259,694 + GFF2892 0.59 -0.7 259,694 + GFF2892 0.59 +0.1 259,694 + GFF2892 0.59 -0.5 259,694 + GFF2892 0.59 +0.6 259,694 + GFF2892 0.59 -1.1 259,695 - GFF2892 0.59 +0.7 259,695 - GFF2892 0.59 +0.0 259,695 - GFF2892 0.59 +0.2 259,695 - GFF2892 0.59 -0.9 259,695 - GFF2892 0.59 -1.7 259,695 - GFF2892 0.59 -0.0 259,695 - GFF2892 0.59 +0.3 259,695 - GFF2892 0.59 -0.3 259,695 - GFF2892 0.59 +0.6 259,695 - GFF2892 0.59 +0.6 259,698 + GFF2892 0.59 +1.5 259,698 + GFF2892 0.59 +0.8 259,698 + GFF2892 0.59 -0.9 259,699 - GFF2892 0.59 -0.2 259,699 - GFF2892 0.59 +0.3 259,707 + GFF2892 0.60 +0.3 259,708 - GFF2892 0.60 +0.5
Or see this region's nucleotide sequence