Strain Fitness in Pseudomonas sp. DMC3 around GFF2870

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2869 and GFF2870 overlap by 4 nucleotidesGFF2870 and GFF2871 are separated by 49 nucleotidesGFF2871 and GFF2872 are separated by 460 nucleotides GFF2869 - hypothetical protein, at 230,323 to 231,558 GFF2869 GFF2870 - hypothetical protein, at 231,555 to 232,163 GFF2870 GFF2871 - hypothetical protein, at 232,213 to 232,626 GFF2871 GFF2872 - hypothetical protein, at 233,087 to 233,938 GFF2872 Position (kb) 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2at 230.589 kb on + strand, within GFF2869at 230.748 kb on + strand, within GFF2869at 230.780 kb on + strand, within GFF2869at 230.781 kb on - strand, within GFF2869at 230.781 kb on - strand, within GFF2869at 230.848 kb on + strand, within GFF2869at 230.906 kb on - strand, within GFF2869at 231.007 kb on + strand, within GFF2869at 231.008 kb on - strand, within GFF2869at 231.008 kb on - strand, within GFF2869at 231.083 kb on - strand, within GFF2869at 231.083 kb on - strand, within GFF2869at 231.083 kb on - strand, within GFF2869at 231.083 kb on - strand, within GFF2869at 231.117 kb on - strand, within GFF2869at 231.117 kb on - strand, within GFF2869at 231.117 kb on - strand, within GFF2869at 231.126 kb on - strand, within GFF2869at 231.169 kb on + strand, within GFF2869at 231.169 kb on + strand, within GFF2869at 231.169 kb on + strand, within GFF2869at 231.169 kb on + strand, within GFF2869at 231.170 kb on - strand, within GFF2869at 231.170 kb on - strand, within GFF2869at 231.170 kb on - strand, within GFF2869at 231.170 kb on - strand, within GFF2869at 231.225 kb on + strand, within GFF2869at 231.247 kb on + strand, within GFF2869at 231.247 kb on + strand, within GFF2869at 231.247 kb on + strand, within GFF2869at 231.248 kb on - strand, within GFF2869at 231.304 kb on + strand, within GFF2869at 231.304 kb on + strand, within GFF2869at 231.304 kb on + strand, within GFF2869at 231.305 kb on - strand, within GFF2869at 231.340 kb on + strand, within GFF2869at 231.340 kb on + strand, within GFF2869at 231.341 kb on - strand, within GFF2869at 231.341 kb on - strand, within GFF2869at 231.512 kb on + strandat 231.512 kb on + strandat 231.512 kb on + strandat 231.513 kb on - strandat 231.513 kb on - strandat 231.513 kb on - strandat 231.513 kb on - strandat 231.513 kb on - strandat 231.513 kb on - strandat 231.513 kb on - strandat 231.513 kb on - strandat 231.513 kb on - strandat 231.513 kb on - strandat 231.513 kb on - strandat 231.538 kb on + strandat 231.539 kb on - strandat 231.618 kb on - strand, within GFF2870at 231.618 kb on - strand, within GFF2870at 231.682 kb on + strand, within GFF2870at 231.682 kb on + strand, within GFF2870at 231.682 kb on + strand, within GFF2870at 231.683 kb on - strand, within GFF2870at 231.695 kb on - strand, within GFF2870at 231.705 kb on - strand, within GFF2870at 231.735 kb on + strand, within GFF2870at 231.735 kb on + strand, within GFF2870at 231.736 kb on - strand, within GFF2870at 231.736 kb on - strand, within GFF2870at 231.793 kb on - strand, within GFF2870at 231.810 kb on + strand, within GFF2870at 231.811 kb on - strand, within GFF2870at 231.811 kb on - strand, within GFF2870at 231.811 kb on - strand, within GFF2870at 231.812 kb on + strand, within GFF2870at 231.825 kb on + strand, within GFF2870at 231.825 kb on + strand, within GFF2870at 231.825 kb on + strand, within GFF2870at 231.828 kb on + strand, within GFF2870at 231.828 kb on + strand, within GFF2870at 231.828 kb on + strand, within GFF2870at 231.829 kb on - strand, within GFF2870at 231.829 kb on - strand, within GFF2870at 231.858 kb on + strand, within GFF2870at 231.907 kb on - strand, within GFF2870at 231.907 kb on - strand, within GFF2870at 231.923 kb on + strand, within GFF2870at 231.924 kb on - strand, within GFF2870at 231.924 kb on - strand, within GFF2870at 232.024 kb on - strand, within GFF2870at 232.026 kb on + strand, within GFF2870at 232.026 kb on + strand, within GFF2870at 232.026 kb on + strand, within GFF2870at 232.161 kb on + strandat 232.176 kb on + strandat 232.177 kb on - strandat 232.177 kb on - strandat 232.177 kb on - strandat 232.199 kb on + strandat 232.199 kb on + strandat 232.224 kb on + strandat 232.224 kb on + strandat 232.225 kb on - strandat 232.225 kb on - strandat 232.225 kb on - strandat 232.225 kb on - strandat 232.225 kb on - strandat 232.408 kb on + strand, within GFF2871at 232.471 kb on + strand, within GFF2871at 232.471 kb on + strand, within GFF2871at 232.471 kb on + strand, within GFF2871at 232.472 kb on - strand, within GFF2871at 232.472 kb on - strand, within GFF2871at 232.472 kb on - strand, within GFF2871at 232.472 kb on - strand, within GFF2871at 232.472 kb on - strand, within GFF2871at 232.472 kb on - strand, within GFF2871at 232.472 kb on - strand, within GFF2871at 232.472 kb on - strand, within GFF2871at 232.472 kb on - strand, within GFF2871at 232.472 kb on - strand, within GFF2871at 232.546 kb on + strand, within GFF2871at 232.546 kb on + strand, within GFF2871at 232.546 kb on + strand, within GFF2871at 232.546 kb on + strand, within GFF2871at 232.546 kb on + strand, within GFF2871at 232.546 kb on + strand, within GFF2871at 232.546 kb on + strand, within GFF2871at 232.546 kb on + strand, within GFF2871at 232.547 kb on - strand, within GFF2871at 232.581 kb on - strand, within GFF2871at 232.660 kb on + strandat 232.661 kb on - strandat 232.661 kb on - strandat 232.661 kb on - strandat 232.720 kb on + strandat 232.720 kb on + strandat 232.720 kb on + strandat 232.721 kb on - strandat 232.752 kb on + strandat 232.752 kb on + strandat 232.753 kb on - strandat 232.768 kb on - strandat 232.809 kb on + strandat 232.809 kb on + strandat 232.810 kb on - strandat 232.810 kb on - strandat 232.985 kb on - strandat 233.012 kb on + strandat 233.012 kb on + strandat 233.012 kb on + strandat 233.013 kb on - strandat 233.013 kb on - strandat 233.032 kb on + strandat 233.033 kb on - strandat 233.033 kb on - strandat 233.033 kb on - strandat 233.049 kb on + strandat 233.050 kb on - strandat 233.097 kb on + strandat 233.097 kb on + strandat 233.097 kb on + strandat 233.097 kb on + strandat 233.150 kb on + strandat 233.150 kb on + strandat 233.150 kb on + strandat 233.151 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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230,589 + GFF2869 0.22 -0.1
230,748 + GFF2869 0.34 +0.1
230,780 + GFF2869 0.37 +1.2
230,781 - GFF2869 0.37 -0.1
230,781 - GFF2869 0.37 -1.4
230,848 + GFF2869 0.42 -0.6
230,906 - GFF2869 0.47 +0.7
231,007 + GFF2869 0.55 -0.3
231,008 - GFF2869 0.55 +0.1
231,008 - GFF2869 0.55 +1.7
231,083 - GFF2869 0.61 +1.3
231,083 - GFF2869 0.61 -0.0
231,083 - GFF2869 0.61 -0.5
231,083 - GFF2869 0.61 +0.1
231,117 - GFF2869 0.64 -0.2
231,117 - GFF2869 0.64 -0.6
231,117 - GFF2869 0.64 -2.3
231,126 - GFF2869 0.65 -0.6
231,169 + GFF2869 0.68 -0.3
231,169 + GFF2869 0.68 +0.3
231,169 + GFF2869 0.68 -1.5
231,169 + GFF2869 0.68 -0.6
231,170 - GFF2869 0.69 +0.3
231,170 - GFF2869 0.69 -0.6
231,170 - GFF2869 0.69 -0.7
231,170 - GFF2869 0.69 +0.2
231,225 + GFF2869 0.73 +0.2
231,247 + GFF2869 0.75 +1.0
231,247 + GFF2869 0.75 -0.8
231,247 + GFF2869 0.75 +0.2
231,248 - GFF2869 0.75 -1.2
231,304 + GFF2869 0.79 +0.7
231,304 + GFF2869 0.79 +0.1
231,304 + GFF2869 0.79 -0.3
231,305 - GFF2869 0.79 -0.3
231,340 + GFF2869 0.82 +0.9
231,340 + GFF2869 0.82 -0.0
231,341 - GFF2869 0.82 -0.0
231,341 - GFF2869 0.82 -0.0
231,512 + -1.0
231,512 + -1.1
231,512 + +0.2
231,513 - +0.0
231,513 - +0.0
231,513 - -1.3
231,513 - -0.5
231,513 - -0.8
231,513 - +0.5
231,513 - +0.2
231,513 - -0.1
231,513 - -1.0
231,513 - +1.1
231,513 - -0.1
231,538 + -0.5
231,539 - -0.8
231,618 - GFF2870 0.10 -0.0
231,618 - GFF2870 0.10 +2.0
231,682 + GFF2870 0.21 +0.5
231,682 + GFF2870 0.21 +0.5
231,682 + GFF2870 0.21 +0.4
231,683 - GFF2870 0.21 -1.0
231,695 - GFF2870 0.23 +0.1
231,705 - GFF2870 0.25 -1.2
231,735 + GFF2870 0.30 +0.3
231,735 + GFF2870 0.30 -0.7
231,736 - GFF2870 0.30 +0.3
231,736 - GFF2870 0.30 +0.4
231,793 - GFF2870 0.39 +0.7
231,810 + GFF2870 0.42 -0.7
231,811 - GFF2870 0.42 +0.2
231,811 - GFF2870 0.42 +0.5
231,811 - GFF2870 0.42 +0.5
231,812 + GFF2870 0.42 +0.4
231,825 + GFF2870 0.44 +1.1
231,825 + GFF2870 0.44 +0.4
231,825 + GFF2870 0.44 +0.5
231,828 + GFF2870 0.45 -0.5
231,828 + GFF2870 0.45 -0.5
231,828 + GFF2870 0.45 +0.7
231,829 - GFF2870 0.45 +0.5
231,829 - GFF2870 0.45 +1.4
231,858 + GFF2870 0.50 -0.5
231,907 - GFF2870 0.58 +0.5
231,907 - GFF2870 0.58 +0.6
231,923 + GFF2870 0.60 -0.1
231,924 - GFF2870 0.61 -0.1
231,924 - GFF2870 0.61 +0.6
232,024 - GFF2870 0.77 +0.7
232,026 + GFF2870 0.77 +0.8
232,026 + GFF2870 0.77 +0.3
232,026 + GFF2870 0.77 +0.9
232,161 + +0.0
232,176 + +0.3
232,177 - +0.4
232,177 - -0.7
232,177 - +0.2
232,199 + -0.1
232,199 + +0.3
232,224 + -0.1
232,224 + -0.9
232,225 - +0.6
232,225 - +0.3
232,225 - +0.5
232,225 - +0.1
232,225 - +0.8
232,408 + GFF2871 0.47 -0.9
232,471 + GFF2871 0.62 -0.5
232,471 + GFF2871 0.62 -1.0
232,471 + GFF2871 0.62 -0.9
232,472 - GFF2871 0.63 -0.1
232,472 - GFF2871 0.63 -0.3
232,472 - GFF2871 0.63 +0.0
232,472 - GFF2871 0.63 -0.3
232,472 - GFF2871 0.63 -0.1
232,472 - GFF2871 0.63 -0.5
232,472 - GFF2871 0.63 +1.5
232,472 - GFF2871 0.63 +0.1
232,472 - GFF2871 0.63 -0.1
232,472 - GFF2871 0.63 +0.9
232,546 + GFF2871 0.80 +0.8
232,546 + GFF2871 0.80 +0.7
232,546 + GFF2871 0.80 -0.9
232,546 + GFF2871 0.80 +0.0
232,546 + GFF2871 0.80 +1.1
232,546 + GFF2871 0.80 +0.3
232,546 + GFF2871 0.80 -0.9
232,546 + GFF2871 0.80 -0.5
232,547 - GFF2871 0.81 -1.3
232,581 - GFF2871 0.89 +1.0
232,660 + +0.1
232,661 - +2.3
232,661 - -0.6
232,661 - +0.0
232,720 + -0.6
232,720 + +0.7
232,720 + -0.1
232,721 - -0.5
232,752 + -0.7
232,752 + +0.2
232,753 - +1.3
232,768 - -0.7
232,809 + +1.1
232,809 + -1.3
232,810 - +1.1
232,810 - +0.1
232,985 - +0.4
233,012 + -0.3
233,012 + +0.1
233,012 + -0.5
233,013 - -0.1
233,013 - +0.3
233,032 + +0.9
233,033 - -0.3
233,033 - -0.7
233,033 - -0.3
233,049 + -0.2
233,050 - -0.2
233,097 + +1.2
233,097 + +0.1
233,097 + -0.5
233,097 + -0.3
233,150 + +1.0
233,150 + +0.4
233,150 + +0.4
233,151 - -0.2

Or see this region's nucleotide sequence