Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2866 and GFF2867 are separated by 344 nucleotides GFF2867 and GFF2868 overlap by 19 nucleotides
GFF2866 - Nodulation protein D 2, at 227,281 to 228,195
GFF2866
GFF2867 - hypothetical protein, at 228,540 to 228,839
GFF2867
GFF2868 - hypothetical protein, at 228,821 to 230,323
GFF2868
Position (kb) 228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 227.692 kb on + strand, within GFF2866 at 227.692 kb on + strand, within GFF2866 at 227.692 kb on + strand, within GFF2866 at 227.692 kb on + strand, within GFF2866 at 227.692 kb on + strand, within GFF2866 at 227.692 kb on + strand, within GFF2866 at 227.692 kb on + strand, within GFF2866 at 227.693 kb on - strand, within GFF2866 at 227.693 kb on - strand, within GFF2866 at 227.693 kb on - strand, within GFF2866 at 227.693 kb on - strand, within GFF2866 at 227.693 kb on - strand, within GFF2866 at 227.693 kb on - strand, within GFF2866 at 227.746 kb on + strand, within GFF2866 at 227.746 kb on + strand, within GFF2866 at 227.746 kb on + strand, within GFF2866 at 227.747 kb on - strand, within GFF2866 at 227.747 kb on - strand, within GFF2866 at 227.747 kb on - strand, within GFF2866 at 227.851 kb on + strand, within GFF2866 at 227.851 kb on + strand, within GFF2866 at 227.852 kb on - strand, within GFF2866 at 227.852 kb on - strand, within GFF2866 at 227.852 kb on - strand, within GFF2866 at 228.022 kb on + strand, within GFF2866 at 228.087 kb on + strand, within GFF2866 at 228.088 kb on - strand, within GFF2866 at 228.193 kb on + strand at 228.193 kb on + strand at 228.193 kb on + strand at 228.194 kb on - strand at 228.194 kb on - strand at 228.194 kb on - strand at 228.289 kb on + strand at 228.289 kb on + strand at 228.289 kb on + strand at 228.289 kb on + strand at 228.289 kb on + strand at 228.289 kb on + strand at 228.289 kb on + strand at 228.289 kb on + strand at 228.290 kb on - strand at 228.290 kb on - strand at 228.290 kb on - strand at 228.290 kb on - strand at 228.290 kb on - strand at 228.290 kb on - strand at 228.290 kb on - strand at 228.290 kb on - strand at 228.290 kb on - strand at 228.290 kb on - strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.291 kb on + strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.292 kb on - strand at 228.350 kb on + strand at 228.351 kb on - strand at 228.401 kb on + strand at 228.402 kb on - strand at 228.418 kb on + strand at 228.462 kb on + strand at 228.502 kb on - strand at 228.609 kb on + strand, within GFF2867 at 228.609 kb on + strand, within GFF2867 at 228.610 kb on - strand, within GFF2867 at 228.610 kb on - strand, within GFF2867 at 228.661 kb on + strand, within GFF2867 at 228.662 kb on - strand, within GFF2867 at 228.662 kb on - strand, within GFF2867 at 228.764 kb on + strand, within GFF2867 at 228.765 kb on - strand, within GFF2867 at 228.765 kb on - strand, within GFF2867 at 228.765 kb on - strand, within GFF2867 at 228.947 kb on + strand at 228.947 kb on + strand at 228.947 kb on + strand at 228.947 kb on + strand at 228.947 kb on + strand at 228.947 kb on + strand at 228.948 kb on - strand at 228.948 kb on - strand at 228.948 kb on - strand at 228.948 kb on - strand at 228.972 kb on + strand, within GFF2868 at 228.987 kb on - strand, within GFF2868 at 228.987 kb on - strand, within GFF2868 at 228.987 kb on - strand, within GFF2868 at 228.987 kb on - strand, within GFF2868 at 229.007 kb on - strand, within GFF2868 at 229.017 kb on - strand, within GFF2868 at 229.046 kb on + strand, within GFF2868 at 229.046 kb on + strand, within GFF2868 at 229.046 kb on + strand, within GFF2868 at 229.046 kb on + strand, within GFF2868 at 229.046 kb on + strand, within GFF2868 at 229.047 kb on - strand, within GFF2868 at 229.047 kb on - strand, within GFF2868 at 229.047 kb on - strand, within GFF2868 at 229.047 kb on - strand, within GFF2868 at 229.147 kb on + strand, within GFF2868 at 229.147 kb on + strand, within GFF2868 at 229.148 kb on - strand, within GFF2868 at 229.314 kb on + strand, within GFF2868 at 229.314 kb on + strand, within GFF2868 at 229.315 kb on - strand, within GFF2868 at 229.315 kb on - strand, within GFF2868 at 229.315 kb on - strand, within GFF2868 at 229.429 kb on - strand, within GFF2868 at 229.529 kb on + strand, within GFF2868 at 229.529 kb on + strand, within GFF2868 at 229.529 kb on + strand, within GFF2868 at 229.530 kb on - strand, within GFF2868 at 229.530 kb on - strand, within GFF2868 at 229.542 kb on + strand, within GFF2868 at 229.542 kb on + strand, within GFF2868 at 229.542 kb on + strand, within GFF2868 at 229.543 kb on - strand, within GFF2868 at 229.543 kb on - strand, within GFF2868 at 229.649 kb on + strand, within GFF2868 at 229.649 kb on + strand, within GFF2868 at 229.649 kb on + strand, within GFF2868 at 229.649 kb on + strand, within GFF2868 at 229.649 kb on + strand, within GFF2868 at 229.649 kb on + strand, within GFF2868 at 229.649 kb on + strand, within GFF2868 at 229.649 kb on + strand, within GFF2868 at 229.650 kb on - strand, within GFF2868 at 229.650 kb on - strand, within GFF2868 at 229.650 kb on - strand, within GFF2868 at 229.650 kb on - strand, within GFF2868 at 229.650 kb on - strand, within GFF2868 at 229.650 kb on - strand, within GFF2868 at 229.653 kb on + strand, within GFF2868 at 229.653 kb on + strand, within GFF2868 at 229.653 kb on + strand, within GFF2868 at 229.653 kb on + strand, within GFF2868 at 229.653 kb on + strand, within GFF2868 at 229.653 kb on + strand, within GFF2868 at 229.653 kb on + strand, within GFF2868 at 229.653 kb on + strand, within GFF2868 at 229.653 kb on + strand, within GFF2868 at 229.653 kb on + strand, within GFF2868 at 229.653 kb on + strand, within GFF2868 at 229.653 kb on + strand, within GFF2868 at 229.654 kb on - strand, within GFF2868 at 229.654 kb on - strand, within GFF2868 at 229.654 kb on - strand, within GFF2868 at 229.654 kb on - strand, within GFF2868 at 229.654 kb on - strand, within GFF2868 at 229.654 kb on - strand, within GFF2868 at 229.654 kb on - strand, within GFF2868 at 229.749 kb on - strand, within GFF2868 at 229.760 kb on + strand, within GFF2868 at 229.760 kb on + strand, within GFF2868 at 229.760 kb on + strand, within GFF2868 at 229.760 kb on + strand, within GFF2868 at 229.761 kb on - strand, within GFF2868 at 229.761 kb on - strand, within GFF2868 at 229.778 kb on + strand, within GFF2868 at 229.778 kb on + strand, within GFF2868 at 229.779 kb on - strand, within GFF2868 at 229.789 kb on + strand, within GFF2868 at 229.789 kb on + strand, within GFF2868 at 229.789 kb on + strand, within GFF2868 at 229.789 kb on + strand, within GFF2868 at 229.790 kb on - strand, within GFF2868 at 229.806 kb on + strand, within GFF2868 at 229.806 kb on + strand, within GFF2868 at 229.806 kb on + strand, within GFF2868 at 229.806 kb on + strand, within GFF2868 at 229.806 kb on + strand, within GFF2868 at 229.806 kb on + strand, within GFF2868 at 229.807 kb on - strand, within GFF2868 at 229.807 kb on - strand, within GFF2868 at 229.807 kb on - strand, within GFF2868 at 229.807 kb on - strand, within GFF2868 at 229.807 kb on - strand, within GFF2868 at 229.807 kb on - strand, within GFF2868 at 229.808 kb on + strand, within GFF2868 at 229.808 kb on + strand, within GFF2868 at 229.808 kb on + strand, within GFF2868 at 229.808 kb on + strand, within GFF2868 at 229.808 kb on + strand, within GFF2868 at 229.809 kb on - strand, within GFF2868 at 229.809 kb on - strand, within GFF2868 at 229.809 kb on - strand, within GFF2868 at 229.809 kb on - strand, within GFF2868 at 229.823 kb on + strand, within GFF2868 at 229.823 kb on + strand, within GFF2868 at 229.824 kb on - strand, within GFF2868 at 229.824 kb on - strand, within GFF2868 at 229.824 kb on - strand, within GFF2868 at 229.825 kb on + strand, within GFF2868 at 229.825 kb on + strand, within GFF2868 at 229.826 kb on - strand, within GFF2868 at 229.826 kb on - strand, within GFF2868 at 229.826 kb on - strand, within GFF2868 at 229.826 kb on - strand, within GFF2868 at 229.826 kb on - strand, within GFF2868
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 227,692 + GFF2866 0.45 +0.5 227,692 + GFF2866 0.45 -0.1 227,692 + GFF2866 0.45 -0.9 227,692 + GFF2866 0.45 -1.3 227,692 + GFF2866 0.45 +1.3 227,692 + GFF2866 0.45 +0.5 227,692 + GFF2866 0.45 +0.6 227,693 - GFF2866 0.45 +0.1 227,693 - GFF2866 0.45 -0.5 227,693 - GFF2866 0.45 -0.7 227,693 - GFF2866 0.45 +0.6 227,693 - GFF2866 0.45 -0.8 227,693 - GFF2866 0.45 +1.1 227,746 + GFF2866 0.51 +1.2 227,746 + GFF2866 0.51 -0.6 227,746 + GFF2866 0.51 -0.6 227,747 - GFF2866 0.51 +0.9 227,747 - GFF2866 0.51 -0.0 227,747 - GFF2866 0.51 +1.1 227,851 + GFF2866 0.62 -0.3 227,851 + GFF2866 0.62 -0.8 227,852 - GFF2866 0.62 +0.0 227,852 - GFF2866 0.62 +0.2 227,852 - GFF2866 0.62 +0.1 228,022 + GFF2866 0.81 +0.3 228,087 + GFF2866 0.88 -0.3 228,088 - GFF2866 0.88 -0.4 228,193 + -0.9 228,193 + +2.2 228,193 + +0.2 228,194 - -0.8 228,194 - +0.0 228,194 - +0.1 228,289 + -0.1 228,289 + +0.1 228,289 + +0.3 228,289 + -0.5 228,289 + -0.5 228,289 + -2.1 228,289 + -0.9 228,289 + +0.3 228,290 - +1.1 228,290 - +0.6 228,290 - +0.5 228,290 - -0.4 228,290 - -0.0 228,290 - +0.1 228,290 - +0.5 228,290 - -0.2 228,290 - +0.5 228,290 - -0.4 228,291 + +0.0 228,291 + -0.2 228,291 + -0.3 228,291 + +0.2 228,291 + -0.8 228,291 + -0.7 228,291 + +0.2 228,291 + -1.4 228,291 + -0.5 228,291 + -0.6 228,291 + +1.3 228,291 + -0.8 228,291 + -0.8 228,291 + -0.7 228,291 + -0.5 228,291 + +0.6 228,291 + -0.1 228,291 + -0.3 228,291 + +0.3 228,291 + +0.8 228,291 + -0.5 228,291 + +0.8 228,292 - +1.0 228,292 - +0.5 228,292 - -1.9 228,292 - -0.5 228,292 - +0.2 228,292 - -0.6 228,292 - +0.8 228,292 - -0.6 228,292 - -0.3 228,292 - +0.1 228,292 - +0.1 228,292 - -1.1 228,292 - +0.2 228,292 - +0.4 228,292 - +0.9 228,292 - -0.3 228,292 - -0.3 228,292 - +0.0 228,292 - -0.1 228,292 - +1.3 228,292 - +0.7 228,292 - +1.1 228,292 - -0.5 228,292 - -1.1 228,292 - -0.5 228,292 - -0.7 228,292 - +0.6 228,292 - +0.4 228,292 - -1.0 228,350 + -0.4 228,351 - +0.5 228,401 + -0.0 228,402 - -1.6 228,418 + -1.3 228,462 + +0.8 228,502 - -0.6 228,609 + GFF2867 0.23 -0.1 228,609 + GFF2867 0.23 +0.8 228,610 - GFF2867 0.23 +0.4 228,610 - GFF2867 0.23 +1.1 228,661 + GFF2867 0.40 +0.6 228,662 - GFF2867 0.41 +0.1 228,662 - GFF2867 0.41 +0.6 228,764 + GFF2867 0.75 -0.5 228,765 - GFF2867 0.75 +1.6 228,765 - GFF2867 0.75 -1.1 228,765 - GFF2867 0.75 -1.2 228,947 + +0.6 228,947 + +0.3 228,947 + -0.3 228,947 + -0.3 228,947 + +0.3 228,947 + +0.2 228,948 - -0.3 228,948 - -2.3 228,948 - -0.1 228,948 - -1.0 228,972 + GFF2868 0.10 -0.6 228,987 - GFF2868 0.11 +1.4 228,987 - GFF2868 0.11 -0.3 228,987 - GFF2868 0.11 -0.0 228,987 - GFF2868 0.11 +0.4 229,007 - GFF2868 0.12 +0.0 229,017 - GFF2868 0.13 +1.2 229,046 + GFF2868 0.15 +1.1 229,046 + GFF2868 0.15 +0.3 229,046 + GFF2868 0.15 -0.2 229,046 + GFF2868 0.15 -0.2 229,046 + GFF2868 0.15 -0.0 229,047 - GFF2868 0.15 -0.7 229,047 - GFF2868 0.15 -1.0 229,047 - GFF2868 0.15 +0.6 229,047 - GFF2868 0.15 -0.7 229,147 + GFF2868 0.22 -0.5 229,147 + GFF2868 0.22 +0.1 229,148 - GFF2868 0.22 -0.7 229,314 + GFF2868 0.33 -0.4 229,314 + GFF2868 0.33 -0.1 229,315 - GFF2868 0.33 +0.1 229,315 - GFF2868 0.33 +0.3 229,315 - GFF2868 0.33 -0.8 229,429 - GFF2868 0.40 +0.7 229,529 + GFF2868 0.47 -1.2 229,529 + GFF2868 0.47 +1.4 229,529 + GFF2868 0.47 +0.4 229,530 - GFF2868 0.47 -0.1 229,530 - GFF2868 0.47 -1.2 229,542 + GFF2868 0.48 -0.4 229,542 + GFF2868 0.48 +0.2 229,542 + GFF2868 0.48 +0.0 229,543 - GFF2868 0.48 -0.6 229,543 - GFF2868 0.48 +1.1 229,649 + GFF2868 0.55 -1.0 229,649 + GFF2868 0.55 -2.2 229,649 + GFF2868 0.55 -0.1 229,649 + GFF2868 0.55 +0.6 229,649 + GFF2868 0.55 +0.7 229,649 + GFF2868 0.55 +0.9 229,649 + GFF2868 0.55 +1.0 229,649 + GFF2868 0.55 -0.5 229,650 - GFF2868 0.55 -0.7 229,650 - GFF2868 0.55 -0.0 229,650 - GFF2868 0.55 -0.3 229,650 - GFF2868 0.55 +0.9 229,650 - GFF2868 0.55 +0.5 229,650 - GFF2868 0.55 +0.3 229,653 + GFF2868 0.55 +2.0 229,653 + GFF2868 0.55 -0.9 229,653 + GFF2868 0.55 -0.5 229,653 + GFF2868 0.55 -1.2 229,653 + GFF2868 0.55 -0.0 229,653 + GFF2868 0.55 +0.3 229,653 + GFF2868 0.55 -0.3 229,653 + GFF2868 0.55 -1.7 229,653 + GFF2868 0.55 +0.5 229,653 + GFF2868 0.55 -0.4 229,653 + GFF2868 0.55 -0.4 229,653 + GFF2868 0.55 +0.4 229,654 - GFF2868 0.55 +0.7 229,654 - GFF2868 0.55 -0.6 229,654 - GFF2868 0.55 -0.1 229,654 - GFF2868 0.55 +1.3 229,654 - GFF2868 0.55 +0.4 229,654 - GFF2868 0.55 +0.7 229,654 - GFF2868 0.55 -0.7 229,749 - GFF2868 0.62 -0.4 229,760 + GFF2868 0.62 +1.1 229,760 + GFF2868 0.62 -0.9 229,760 + GFF2868 0.62 -0.9 229,760 + GFF2868 0.62 +0.1 229,761 - GFF2868 0.63 -0.0 229,761 - GFF2868 0.63 -0.1 229,778 + GFF2868 0.64 +0.3 229,778 + GFF2868 0.64 +0.3 229,779 - GFF2868 0.64 +0.1 229,789 + GFF2868 0.64 +1.0 229,789 + GFF2868 0.64 +0.6 229,789 + GFF2868 0.64 -0.8 229,789 + GFF2868 0.64 +0.1 229,790 - GFF2868 0.64 -1.2 229,806 + GFF2868 0.66 +0.7 229,806 + GFF2868 0.66 +0.9 229,806 + GFF2868 0.66 +0.8 229,806 + GFF2868 0.66 -0.6 229,806 + GFF2868 0.66 +1.3 229,806 + GFF2868 0.66 +0.3 229,807 - GFF2868 0.66 -0.3 229,807 - GFF2868 0.66 +0.9 229,807 - GFF2868 0.66 -3.1 229,807 - GFF2868 0.66 -1.6 229,807 - GFF2868 0.66 -0.6 229,807 - GFF2868 0.66 +1.0 229,808 + GFF2868 0.66 -0.2 229,808 + GFF2868 0.66 +0.0 229,808 + GFF2868 0.66 -1.2 229,808 + GFF2868 0.66 -0.1 229,808 + GFF2868 0.66 -0.1 229,809 - GFF2868 0.66 +0.2 229,809 - GFF2868 0.66 -0.5 229,809 - GFF2868 0.66 -0.9 229,809 - GFF2868 0.66 -1.0 229,823 + GFF2868 0.67 +1.0 229,823 + GFF2868 0.67 +0.3 229,824 - GFF2868 0.67 -0.7 229,824 - GFF2868 0.67 +0.0 229,824 - GFF2868 0.67 -0.7 229,825 + GFF2868 0.67 -0.7 229,825 + GFF2868 0.67 -0.1 229,826 - GFF2868 0.67 -0.4 229,826 - GFF2868 0.67 +0.3 229,826 - GFF2868 0.67 +0.1 229,826 - GFF2868 0.67 -0.4 229,826 - GFF2868 0.67 +1.5
Or see this region's nucleotide sequence