Strain Fitness in Pseudomonas sp. DMC3 around GFF281

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF280 and GFF281 are separated by 99 nucleotidesGFF281 and GFF282 are separated by 102 nucleotides GFF280 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy late synthase, at 311,187 to 312,134 GFF280 GFF281 - hypothetical protein, at 312,234 to 312,812 GFF281 GFF282 - Acyl-homoserine lactone acylase QuiP, at 312,915 to 315,326 GFF282 Position (kb) 312 313Strain fitness (log2 ratio) -2 -1 0 1 2at 311.545 kb on - strand, within GFF280at 311.563 kb on + strand, within GFF280at 311.563 kb on + strand, within GFF280at 311.563 kb on + strand, within GFF280at 311.563 kb on + strand, within GFF280at 311.563 kb on + strand, within GFF280at 311.563 kb on + strand, within GFF280at 311.563 kb on + strand, within GFF280at 311.566 kb on + strand, within GFF280at 311.566 kb on + strand, within GFF280at 311.566 kb on + strand, within GFF280at 311.567 kb on - strand, within GFF280at 311.567 kb on - strand, within GFF280at 311.567 kb on - strand, within GFF280at 311.770 kb on + strand, within GFF280at 311.884 kb on + strand, within GFF280at 311.902 kb on + strand, within GFF280at 311.903 kb on - strand, within GFF280at 311.905 kb on + strand, within GFF280at 311.906 kb on - strand, within GFF280at 311.971 kb on + strand, within GFF280at 312.034 kb on + strand, within GFF280at 312.035 kb on - strand, within GFF280at 312.035 kb on - strand, within GFF280at 312.035 kb on - strand, within GFF280at 312.046 kb on + strandat 312.105 kb on + strandat 312.125 kb on + strandat 312.178 kb on - strandat 312.178 kb on - strandat 312.178 kb on - strandat 312.178 kb on - strandat 312.207 kb on + strandat 312.207 kb on + strandat 312.208 kb on - strandat 312.208 kb on - strandat 312.309 kb on + strand, within GFF281at 312.310 kb on - strand, within GFF281at 312.354 kb on - strand, within GFF281at 312.354 kb on - strand, within GFF281at 312.361 kb on + strand, within GFF281at 312.413 kb on + strand, within GFF281at 312.644 kb on + strand, within GFF281at 312.645 kb on - strand, within GFF281at 312.645 kb on - strand, within GFF281at 312.661 kb on - strand, within GFF281at 312.673 kb on - strand, within GFF281at 312.764 kb on + strandat 312.764 kb on + strandat 312.765 kb on - strandat 312.784 kb on - strandat 312.784 kb on - strandat 312.810 kb on + strandat 312.810 kb on + strandat 312.811 kb on - strandat 312.811 kb on - strandat 312.978 kb on + strandat 312.979 kb on - strandat 312.980 kb on + strandat 312.980 kb on + strandat 312.980 kb on + strandat 312.980 kb on + strandat 312.981 kb on - strandat 312.981 kb on - strandat 312.981 kb on - strandat 312.981 kb on - strandat 312.981 kb on - strandat 312.984 kb on + strandat 312.984 kb on + strandat 312.984 kb on + strandat 312.984 kb on + strandat 312.984 kb on + strandat 312.984 kb on + strandat 312.985 kb on - strandat 313.053 kb on + strandat 313.054 kb on - strandat 313.105 kb on - strandat 313.264 kb on - strand, within GFF282at 313.314 kb on + strand, within GFF282at 313.479 kb on + strand, within GFF282at 313.507 kb on - strand, within GFF282at 313.507 kb on - strand, within GFF282at 313.767 kb on + strand, within GFF282at 313.803 kb on + strand, within GFF282at 313.803 kb on + strand, within GFF282at 313.803 kb on + strand, within GFF282at 313.804 kb on - strand, within GFF282at 313.804 kb on - strand, within GFF282

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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311,545 - GFF280 0.38 -0.7
311,563 + GFF280 0.40 +1.9
311,563 + GFF280 0.40 +0.2
311,563 + GFF280 0.40 -0.0
311,563 + GFF280 0.40 -0.3
311,563 + GFF280 0.40 -2.1
311,563 + GFF280 0.40 -0.2
311,563 + GFF280 0.40 -0.4
311,566 + GFF280 0.40 +0.6
311,566 + GFF280 0.40 +0.1
311,566 + GFF280 0.40 +0.1
311,567 - GFF280 0.40 -1.0
311,567 - GFF280 0.40 -0.3
311,567 - GFF280 0.40 +0.5
311,770 + GFF280 0.61 +0.7
311,884 + GFF280 0.74 +0.1
311,902 + GFF280 0.75 +0.2
311,903 - GFF280 0.76 +0.8
311,905 + GFF280 0.76 -0.4
311,906 - GFF280 0.76 -1.1
311,971 + GFF280 0.83 -1.9
312,034 + GFF280 0.89 -1.1
312,035 - GFF280 0.89 -0.6
312,035 - GFF280 0.89 -0.8
312,035 - GFF280 0.89 -0.7
312,046 + -0.2
312,105 + +0.2
312,125 + +0.2
312,178 - -0.5
312,178 - -0.3
312,178 - -0.7
312,178 - +0.4
312,207 + +0.2
312,207 + +0.7
312,208 - +1.2
312,208 - -0.7
312,309 + GFF281 0.13 -0.0
312,310 - GFF281 0.13 +0.2
312,354 - GFF281 0.21 -0.3
312,354 - GFF281 0.21 -1.4
312,361 + GFF281 0.22 -0.0
312,413 + GFF281 0.31 +0.8
312,644 + GFF281 0.71 -0.7
312,645 - GFF281 0.71 +1.2
312,645 - GFF281 0.71 +0.6
312,661 - GFF281 0.74 +1.0
312,673 - GFF281 0.76 +1.7
312,764 + +0.4
312,764 + +1.6
312,765 - +0.8
312,784 - +1.6
312,784 - +0.6
312,810 + -0.3
312,810 + +0.6
312,811 - -0.2
312,811 - -0.8
312,978 + +0.1
312,979 - +0.7
312,980 + +0.4
312,980 + +1.2
312,980 + +0.2
312,980 + +0.1
312,981 - -0.3
312,981 - -0.4
312,981 - +0.0
312,981 - -1.1
312,981 - +0.2
312,984 + -0.4
312,984 + -0.0
312,984 + -0.2
312,984 + +1.0
312,984 + -0.8
312,984 + +1.0
312,985 - -1.3
313,053 + -0.4
313,054 - +0.6
313,105 - -0.1
313,264 - GFF282 0.14 +0.4
313,314 + GFF282 0.17 +0.2
313,479 + GFF282 0.23 -2.5
313,507 - GFF282 0.25 +0.4
313,507 - GFF282 0.25 -0.6
313,767 + GFF282 0.35 -0.2
313,803 + GFF282 0.37 +0.3
313,803 + GFF282 0.37 +0.0
313,803 + GFF282 0.37 -0.9
313,804 - GFF282 0.37 +0.0
313,804 - GFF282 0.37 -0.4

Or see this region's nucleotide sequence