Strain Fitness in Pseudomonas sp. DMC3 around GFF2705

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2704 and GFF2705 are separated by 189 nucleotidesGFF2705 and GFF2706 are separated by 52 nucleotides GFF2704 - Non-homologous end joining protein Ku, at 26,421 to 27,287 GFF2704 GFF2705 - hypothetical protein, at 27,477 to 27,797 GFF2705 GFF2706 - Aldose sugar dehydrogenase YliI, at 27,850 to 28,995 GFF2706 Position (kb) 27 28Strain fitness (log2 ratio) -1 0 1at 26.631 kb on + strand, within GFF2704at 26.632 kb on - strand, within GFF2704at 26.632 kb on - strand, within GFF2704at 26.656 kb on + strand, within GFF2704at 26.656 kb on + strand, within GFF2704at 26.657 kb on - strand, within GFF2704at 26.657 kb on - strand, within GFF2704at 26.846 kb on - strand, within GFF2704at 26.846 kb on - strand, within GFF2704at 26.921 kb on - strand, within GFF2704at 26.953 kb on + strand, within GFF2704at 26.953 kb on + strand, within GFF2704at 26.953 kb on + strand, within GFF2704at 26.953 kb on + strand, within GFF2704at 26.953 kb on + strand, within GFF2704at 26.953 kb on + strand, within GFF2704at 26.953 kb on + strand, within GFF2704at 26.953 kb on + strand, within GFF2704at 26.954 kb on - strand, within GFF2704at 26.954 kb on - strand, within GFF2704at 26.954 kb on - strand, within GFF2704at 26.954 kb on - strand, within GFF2704at 26.963 kb on + strand, within GFF2704at 26.964 kb on - strand, within GFF2704at 27.073 kb on + strand, within GFF2704at 27.073 kb on + strand, within GFF2704at 27.074 kb on - strand, within GFF2704at 27.074 kb on - strand, within GFF2704at 27.074 kb on - strand, within GFF2704at 27.152 kb on + strand, within GFF2704at 27.152 kb on + strand, within GFF2704at 27.152 kb on + strand, within GFF2704at 27.152 kb on + strand, within GFF2704at 27.152 kb on + strand, within GFF2704at 27.154 kb on + strand, within GFF2704at 27.154 kb on + strand, within GFF2704at 27.155 kb on - strand, within GFF2704at 27.243 kb on + strandat 27.243 kb on + strandat 27.243 kb on + strandat 27.243 kb on + strandat 27.243 kb on + strandat 27.243 kb on + strandat 27.243 kb on + strandat 27.244 kb on - strandat 27.244 kb on - strandat 27.244 kb on - strandat 27.381 kb on + strandat 27.381 kb on + strandat 27.382 kb on - strandat 27.382 kb on - strandat 27.382 kb on - strandat 27.382 kb on - strandat 27.382 kb on - strandat 27.382 kb on - strandat 27.382 kb on - strandat 27.382 kb on - strandat 27.428 kb on + strandat 27.449 kb on - strandat 27.449 kb on - strandat 27.449 kb on - strandat 27.470 kb on - strandat 27.582 kb on + strand, within GFF2705at 27.582 kb on + strand, within GFF2705at 27.733 kb on + strand, within GFF2705at 27.859 kb on - strandat 27.859 kb on - strandat 27.859 kb on - strandat 27.859 kb on - strandat 27.869 kb on + strandat 27.869 kb on + strandat 27.869 kb on + strandat 27.869 kb on + strandat 27.869 kb on + strandat 27.870 kb on - strandat 28.142 kb on + strand, within GFF2706at 28.142 kb on + strand, within GFF2706at 28.142 kb on + strand, within GFF2706at 28.143 kb on - strand, within GFF2706at 28.143 kb on - strand, within GFF2706at 28.180 kb on + strand, within GFF2706at 28.180 kb on + strand, within GFF2706at 28.180 kb on + strand, within GFF2706at 28.181 kb on - strand, within GFF2706at 28.181 kb on - strand, within GFF2706at 28.181 kb on - strand, within GFF2706at 28.189 kb on + strand, within GFF2706at 28.190 kb on - strand, within GFF2706at 28.190 kb on - strand, within GFF2706at 28.190 kb on - strand, within GFF2706at 28.357 kb on + strand, within GFF2706at 28.663 kb on + strand, within GFF2706at 28.663 kb on + strand, within GFF2706at 28.664 kb on - strand, within GFF2706at 28.768 kb on + strand, within GFF2706

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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26,631 + GFF2704 0.24 +0.1
26,632 - GFF2704 0.24 -0.0
26,632 - GFF2704 0.24 -0.3
26,656 + GFF2704 0.27 -1.2
26,656 + GFF2704 0.27 +0.6
26,657 - GFF2704 0.27 +0.4
26,657 - GFF2704 0.27 -0.9
26,846 - GFF2704 0.49 -0.3
26,846 - GFF2704 0.49 -0.5
26,921 - GFF2704 0.58 +0.5
26,953 + GFF2704 0.61 +0.1
26,953 + GFF2704 0.61 +0.5
26,953 + GFF2704 0.61 +0.9
26,953 + GFF2704 0.61 -0.3
26,953 + GFF2704 0.61 -0.8
26,953 + GFF2704 0.61 -0.1
26,953 + GFF2704 0.61 +0.1
26,953 + GFF2704 0.61 +0.5
26,954 - GFF2704 0.61 -1.3
26,954 - GFF2704 0.61 -0.6
26,954 - GFF2704 0.61 +0.6
26,954 - GFF2704 0.61 -0.3
26,963 + GFF2704 0.63 -0.9
26,964 - GFF2704 0.63 +0.1
27,073 + GFF2704 0.75 +0.2
27,073 + GFF2704 0.75 -0.9
27,074 - GFF2704 0.75 -0.6
27,074 - GFF2704 0.75 +0.3
27,074 - GFF2704 0.75 +0.4
27,152 + GFF2704 0.84 +1.4
27,152 + GFF2704 0.84 -0.2
27,152 + GFF2704 0.84 +0.2
27,152 + GFF2704 0.84 -0.3
27,152 + GFF2704 0.84 +0.3
27,154 + GFF2704 0.85 +0.7
27,154 + GFF2704 0.85 +0.3
27,155 - GFF2704 0.85 +0.0
27,243 + -0.1
27,243 + -0.3
27,243 + +0.3
27,243 + +0.5
27,243 + -0.7
27,243 + -0.4
27,243 + -0.4
27,244 - -0.5
27,244 - -0.6
27,244 - +0.7
27,381 + -0.2
27,381 + -1.2
27,382 - -1.7
27,382 - -0.9
27,382 - -1.7
27,382 - -0.5
27,382 - -0.7
27,382 - -1.2
27,382 - +0.9
27,382 - +0.6
27,428 + +0.1
27,449 - -0.6
27,449 - +0.1
27,449 - +0.5
27,470 - -0.5
27,582 + GFF2705 0.33 +1.3
27,582 + GFF2705 0.33 -0.1
27,733 + GFF2705 0.80 +0.5
27,859 - +0.1
27,859 - -0.1
27,859 - +0.5
27,859 - +0.0
27,869 + +1.4
27,869 + -1.0
27,869 + -0.1
27,869 + +0.2
27,869 + -1.0
27,870 - +0.2
28,142 + GFF2706 0.25 -0.1
28,142 + GFF2706 0.25 +0.2
28,142 + GFF2706 0.25 +1.1
28,143 - GFF2706 0.26 -0.0
28,143 - GFF2706 0.26 -0.3
28,180 + GFF2706 0.29 +0.6
28,180 + GFF2706 0.29 +0.2
28,180 + GFF2706 0.29 -0.6
28,181 - GFF2706 0.29 +0.4
28,181 - GFF2706 0.29 -1.6
28,181 - GFF2706 0.29 +0.0
28,189 + GFF2706 0.30 -1.1
28,190 - GFF2706 0.30 -0.9
28,190 - GFF2706 0.30 +0.4
28,190 - GFF2706 0.30 -0.2
28,357 + GFF2706 0.44 -0.1
28,663 + GFF2706 0.71 +0.1
28,663 + GFF2706 0.71 -0.0
28,664 - GFF2706 0.71 +0.1
28,768 + GFF2706 0.80 +0.2

Or see this region's nucleotide sequence