Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2660 and GFF2661 are separated by 86 nucleotides GFF2661 and GFF2662 are separated by 46 nucleotides GFF2662 and GFF2663 are separated by 135 nucleotides GFF2663 and GFF2664 are separated by 122 nucleotides GFF2664 and GFF2665 are separated by 14 nucleotides
GFF2660 - hypothetical protein, at 458,821 to 459,009
GFF2660
GFF2661 - hypothetical protein, at 459,096 to 459,263
GFF2661
GFF2662 - hypothetical protein, at 459,310 to 459,681
GFF2662
GFF2663 - hypothetical protein, at 459,817 to 460,236
GFF2663
GFF2664 - IS1182 family transposase ISPsy6, at 460,359 to 461,135
GFF2664
GFF2665 - IS1182 family transposase ISPsy27, at 461,150 to 461,782
GFF2665
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2 at 458.820 kb on + strand at 458.820 kb on + strand at 458.820 kb on + strand at 458.820 kb on + strand at 458.820 kb on + strand at 458.821 kb on - strand at 458.821 kb on - strand at 458.821 kb on - strand at 458.821 kb on - strand at 458.821 kb on - strand at 458.821 kb on - strand at 458.821 kb on - strand at 458.835 kb on + strand at 458.896 kb on + strand, within GFF2660 at 458.896 kb on + strand, within GFF2660 at 458.897 kb on - strand, within GFF2660 at 459.080 kb on + strand at 459.081 kb on - strand at 459.081 kb on - strand at 459.081 kb on - strand at 459.081 kb on - strand at 459.122 kb on + strand, within GFF2661 at 459.122 kb on + strand, within GFF2661 at 459.122 kb on + strand, within GFF2661 at 459.122 kb on + strand, within GFF2661 at 459.122 kb on + strand, within GFF2661 at 459.122 kb on + strand, within GFF2661 at 459.122 kb on + strand, within GFF2661 at 459.123 kb on - strand, within GFF2661 at 459.123 kb on - strand, within GFF2661 at 459.123 kb on - strand, within GFF2661 at 459.123 kb on - strand, within GFF2661 at 459.123 kb on - strand, within GFF2661 at 459.123 kb on - strand, within GFF2661 at 459.123 kb on - strand, within GFF2661 at 459.123 kb on - strand, within GFF2661 at 459.123 kb on - strand, within GFF2661 at 459.123 kb on - strand, within GFF2661 at 459.123 kb on - strand, within GFF2661 at 459.192 kb on + strand, within GFF2661 at 459.193 kb on - strand, within GFF2661 at 459.264 kb on + strand at 459.264 kb on + strand at 459.265 kb on - strand at 459.265 kb on - strand at 459.265 kb on - strand at 459.293 kb on + strand at 459.294 kb on - strand at 459.294 kb on - strand at 459.317 kb on + strand at 459.317 kb on + strand at 459.768 kb on + strand at 459.768 kb on + strand at 459.816 kb on + strand at 459.816 kb on + strand at 459.817 kb on - strand at 459.817 kb on - strand at 459.817 kb on - strand at 459.830 kb on + strand at 459.830 kb on + strand at 459.831 kb on - strand at 460.152 kb on - strand, within GFF2663 at 460.155 kb on + strand, within GFF2663 at 460.156 kb on - strand, within GFF2663 at 460.156 kb on - strand, within GFF2663 at 460.156 kb on - strand, within GFF2663 at 460.330 kb on + strand at 460.330 kb on + strand at 460.331 kb on - strand at 460.331 kb on - strand at 460.331 kb on - strand at 460.401 kb on - strand at 460.420 kb on + strand at 460.420 kb on + strand at 460.420 kb on + strand at 460.421 kb on - strand at 460.495 kb on - strand, within GFF2664 at 460.505 kb on + strand, within GFF2664 at 460.506 kb on - strand, within GFF2664 at 460.506 kb on - strand, within GFF2664 at 460.621 kb on + strand, within GFF2664 at 460.621 kb on + strand, within GFF2664 at 460.621 kb on + strand, within GFF2664 at 460.621 kb on + strand, within GFF2664 at 460.622 kb on - strand, within GFF2664 at 460.622 kb on - strand, within GFF2664 at 460.622 kb on - strand, within GFF2664 at 460.690 kb on + strand, within GFF2664 at 460.690 kb on + strand, within GFF2664 at 460.690 kb on + strand, within GFF2664 at 460.691 kb on - strand, within GFF2664 at 460.719 kb on - strand, within GFF2664 at 460.771 kb on + strand, within GFF2664 at 460.772 kb on - strand, within GFF2664 at 460.797 kb on + strand, within GFF2664 at 460.797 kb on + strand, within GFF2664 at 460.797 kb on + strand, within GFF2664 at 460.797 kb on + strand, within GFF2664 at 460.843 kb on + strand, within GFF2664 at 460.843 kb on + strand, within GFF2664 at 460.843 kb on + strand, within GFF2664 at 460.843 kb on + strand, within GFF2664 at 460.843 kb on + strand, within GFF2664 at 460.843 kb on + strand, within GFF2664 at 460.844 kb on - strand, within GFF2664 at 460.844 kb on - strand, within GFF2664 at 460.892 kb on - strand, within GFF2664 at 461.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 458,820 + +0.2 458,820 + +0.5 458,820 + -0.9 458,820 + +0.3 458,820 + -0.4 458,821 - -0.8 458,821 - -0.0 458,821 - -0.4 458,821 - +0.3 458,821 - -1.2 458,821 - -0.3 458,821 - +0.5 458,835 + -0.3 458,896 + GFF2660 0.40 -1.0 458,896 + GFF2660 0.40 -0.7 458,897 - GFF2660 0.40 -0.1 459,080 + -0.4 459,081 - -0.2 459,081 - +0.3 459,081 - +0.4 459,081 - +0.3 459,122 + GFF2661 0.15 +0.7 459,122 + GFF2661 0.15 +2.2 459,122 + GFF2661 0.15 +0.2 459,122 + GFF2661 0.15 +0.1 459,122 + GFF2661 0.15 +0.1 459,122 + GFF2661 0.15 +0.1 459,122 + GFF2661 0.15 -0.2 459,123 - GFF2661 0.16 -0.0 459,123 - GFF2661 0.16 +0.9 459,123 - GFF2661 0.16 +0.8 459,123 - GFF2661 0.16 +0.8 459,123 - GFF2661 0.16 +0.8 459,123 - GFF2661 0.16 -0.0 459,123 - GFF2661 0.16 -1.0 459,123 - GFF2661 0.16 +1.0 459,123 - GFF2661 0.16 -0.3 459,123 - GFF2661 0.16 -0.5 459,123 - GFF2661 0.16 +0.1 459,192 + GFF2661 0.57 -0.3 459,193 - GFF2661 0.58 -0.9 459,264 + +0.4 459,264 + +0.4 459,265 - -0.9 459,265 - -0.8 459,265 - +0.6 459,293 + -0.9 459,294 - -0.4 459,294 - -0.9 459,317 + +0.4 459,317 + +0.2 459,768 + +0.1 459,768 + +0.8 459,816 + +0.7 459,816 + +0.3 459,817 - +0.7 459,817 - -0.2 459,817 - +2.0 459,830 + -0.2 459,830 + +0.1 459,831 - -1.1 460,152 - GFF2663 0.80 +0.3 460,155 + GFF2663 0.80 +0.1 460,156 - GFF2663 0.81 +0.2 460,156 - GFF2663 0.81 +0.3 460,156 - GFF2663 0.81 +1.1 460,330 + -0.6 460,330 + +0.4 460,331 - -0.1 460,331 - +0.0 460,331 - +0.1 460,401 - +0.6 460,420 + -0.2 460,420 + -0.8 460,420 + -0.4 460,421 - -1.8 460,495 - GFF2664 0.18 +0.4 460,505 + GFF2664 0.19 -0.5 460,506 - GFF2664 0.19 +0.1 460,506 - GFF2664 0.19 -0.8 460,621 + GFF2664 0.34 -0.9 460,621 + GFF2664 0.34 -0.5 460,621 + GFF2664 0.34 +0.1 460,621 + GFF2664 0.34 -0.8 460,622 - GFF2664 0.34 +0.3 460,622 - GFF2664 0.34 +0.7 460,622 - GFF2664 0.34 -0.2 460,690 + GFF2664 0.43 -0.1 460,690 + GFF2664 0.43 +0.6 460,690 + GFF2664 0.43 +0.5 460,691 - GFF2664 0.43 +0.0 460,719 - GFF2664 0.46 -0.6 460,771 + GFF2664 0.53 -0.7 460,772 - GFF2664 0.53 -1.3 460,797 + GFF2664 0.56 +0.2 460,797 + GFF2664 0.56 -0.8 460,797 + GFF2664 0.56 -0.5 460,797 + GFF2664 0.56 -0.4 460,843 + GFF2664 0.62 +0.9 460,843 + GFF2664 0.62 -0.2 460,843 + GFF2664 0.62 +0.2 460,843 + GFF2664 0.62 -1.6 460,843 + GFF2664 0.62 +0.5 460,843 + GFF2664 0.62 +0.3 460,844 - GFF2664 0.62 -0.9 460,844 - GFF2664 0.62 -0.5 460,892 - GFF2664 0.69 +0.4 461,106 - +0.6
Or see this region's nucleotide sequence