Strain Fitness in Pseudomonas sp. DMC3 around GFF2469

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2468 and GFF2469 are separated by 690 nucleotidesGFF2469 and GFF2470 are separated by 11 nucleotides GFF2468 - hypothetical protein, at 254,442 to 254,801 GFF2468 GFF2469 - Flagellar biosynthesis protein FlhA, at 255,492 to 257,552 GFF2469 GFF2470 - Flagellar biosynthesis protein FlhF, at 257,564 to 258,904 GFF2470 Position (kb) 255 256 257 258Strain fitness (log2 ratio) -2 -1 0 1 2at 254.644 kb on + strand, within GFF2468at 254.644 kb on + strand, within GFF2468at 254.644 kb on + strand, within GFF2468at 254.695 kb on + strand, within GFF2468at 254.695 kb on + strand, within GFF2468at 254.696 kb on - strand, within GFF2468at 254.696 kb on - strand, within GFF2468at 254.820 kb on - strandat 254.867 kb on + strandat 254.902 kb on + strandat 254.923 kb on + strandat 254.923 kb on + strandat 254.924 kb on - strandat 255.043 kb on + strandat 255.158 kb on + strandat 255.303 kb on + strandat 255.313 kb on + strandat 255.324 kb on + strandat 255.403 kb on + strandat 255.404 kb on - strandat 255.404 kb on - strandat 255.404 kb on - strandat 255.439 kb on + strandat 255.440 kb on - strandat 255.446 kb on + strandat 255.447 kb on - strandat 255.447 kb on - strandat 255.566 kb on + strandat 255.566 kb on + strandat 255.567 kb on - strandat 255.567 kb on - strandat 255.612 kb on + strandat 255.612 kb on + strandat 255.612 kb on + strandat 255.613 kb on - strandat 255.613 kb on - strandat 255.786 kb on - strand, within GFF2469at 255.789 kb on + strand, within GFF2469at 255.789 kb on + strand, within GFF2469at 255.789 kb on + strand, within GFF2469at 255.789 kb on + strand, within GFF2469at 255.789 kb on + strand, within GFF2469at 255.789 kb on + strand, within GFF2469at 255.789 kb on + strand, within GFF2469at 255.790 kb on - strand, within GFF2469at 255.790 kb on - strand, within GFF2469at 255.790 kb on - strand, within GFF2469at 255.790 kb on - strand, within GFF2469at 255.790 kb on - strand, within GFF2469at 255.790 kb on - strand, within GFF2469at 256.005 kb on + strand, within GFF2469at 256.006 kb on - strand, within GFF2469at 256.146 kb on + strand, within GFF2469at 256.147 kb on - strand, within GFF2469at 256.147 kb on - strand, within GFF2469at 256.201 kb on + strand, within GFF2469at 256.206 kb on - strand, within GFF2469at 256.396 kb on - strand, within GFF2469at 256.746 kb on + strand, within GFF2469at 256.747 kb on - strand, within GFF2469at 256.785 kb on + strand, within GFF2469at 256.785 kb on + strand, within GFF2469at 256.785 kb on + strand, within GFF2469at 256.786 kb on - strand, within GFF2469at 256.786 kb on - strand, within GFF2469at 256.786 kb on - strand, within GFF2469at 256.786 kb on - strand, within GFF2469at 256.786 kb on - strand, within GFF2469at 256.885 kb on - strand, within GFF2469at 256.938 kb on + strand, within GFF2469at 256.938 kb on + strand, within GFF2469at 257.221 kb on + strand, within GFF2469at 257.221 kb on + strand, within GFF2469at 257.222 kb on - strand, within GFF2469at 257.222 kb on - strand, within GFF2469at 257.245 kb on + strand, within GFF2469at 257.245 kb on + strand, within GFF2469at 257.245 kb on + strand, within GFF2469at 257.246 kb on - strand, within GFF2469at 257.275 kb on + strand, within GFF2469at 257.275 kb on + strand, within GFF2469at 257.286 kb on - strand, within GFF2469at 257.490 kb on + strandat 257.490 kb on + strandat 257.500 kb on + strandat 257.501 kb on - strandat 257.501 kb on - strandat 257.536 kb on + strandat 257.555 kb on + strandat 257.555 kb on + strandat 257.556 kb on - strandat 257.563 kb on + strandat 257.564 kb on - strandat 257.564 kb on - strandat 257.906 kb on + strand, within GFF2470at 257.906 kb on + strand, within GFF2470at 257.906 kb on + strand, within GFF2470at 257.907 kb on - strand, within GFF2470at 257.907 kb on - strand, within GFF2470at 257.907 kb on - strand, within GFF2470at 258.084 kb on - strand, within GFF2470at 258.312 kb on - strand, within GFF2470at 258.323 kb on + strand, within GFF2470at 258.324 kb on - strand, within GFF2470at 258.496 kb on + strand, within GFF2470

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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254,644 + GFF2468 0.56 -0.2
254,644 + GFF2468 0.56 +0.2
254,644 + GFF2468 0.56 -0.4
254,695 + GFF2468 0.70 +0.1
254,695 + GFF2468 0.70 -0.6
254,696 - GFF2468 0.71 -0.4
254,696 - GFF2468 0.71 -0.3
254,820 - +0.6
254,867 + +0.5
254,902 + -0.7
254,923 + +0.2
254,923 + -0.5
254,924 - -0.6
255,043 + +0.4
255,158 + -1.1
255,303 + +0.7
255,313 + -0.5
255,324 + -1.1
255,403 + -0.7
255,404 - +1.4
255,404 - +1.2
255,404 - +0.1
255,439 + +0.4
255,440 - -0.3
255,446 + +0.1
255,447 - +0.6
255,447 - +0.7
255,566 + +0.7
255,566 + +0.4
255,567 - +0.4
255,567 - +0.1
255,612 + +0.2
255,612 + +0.8
255,612 + +0.6
255,613 - +0.9
255,613 - -0.0
255,786 - GFF2469 0.14 +1.2
255,789 + GFF2469 0.14 +0.9
255,789 + GFF2469 0.14 +0.8
255,789 + GFF2469 0.14 +0.3
255,789 + GFF2469 0.14 +0.5
255,789 + GFF2469 0.14 -0.1
255,789 + GFF2469 0.14 +1.0
255,789 + GFF2469 0.14 +1.9
255,790 - GFF2469 0.14 +1.0
255,790 - GFF2469 0.14 +0.6
255,790 - GFF2469 0.14 +1.3
255,790 - GFF2469 0.14 +1.6
255,790 - GFF2469 0.14 +1.1
255,790 - GFF2469 0.14 +1.3
256,005 + GFF2469 0.25 +0.1
256,006 - GFF2469 0.25 +0.8
256,146 + GFF2469 0.32 +0.2
256,147 - GFF2469 0.32 +2.0
256,147 - GFF2469 0.32 -0.4
256,201 + GFF2469 0.34 +1.5
256,206 - GFF2469 0.35 +0.8
256,396 - GFF2469 0.44 +0.0
256,746 + GFF2469 0.61 +0.8
256,747 - GFF2469 0.61 +1.7
256,785 + GFF2469 0.63 +0.6
256,785 + GFF2469 0.63 +1.1
256,785 + GFF2469 0.63 -0.0
256,786 - GFF2469 0.63 -0.6
256,786 - GFF2469 0.63 +0.3
256,786 - GFF2469 0.63 +0.8
256,786 - GFF2469 0.63 +1.0
256,786 - GFF2469 0.63 +0.4
256,885 - GFF2469 0.68 +0.5
256,938 + GFF2469 0.70 +0.9
256,938 + GFF2469 0.70 -0.2
257,221 + GFF2469 0.84 -0.9
257,221 + GFF2469 0.84 -0.3
257,222 - GFF2469 0.84 -2.1
257,222 - GFF2469 0.84 -0.1
257,245 + GFF2469 0.85 +0.2
257,245 + GFF2469 0.85 +0.8
257,245 + GFF2469 0.85 -0.1
257,246 - GFF2469 0.85 -1.0
257,275 + GFF2469 0.87 +2.0
257,275 + GFF2469 0.87 +1.1
257,286 - GFF2469 0.87 +0.3
257,490 + +1.4
257,490 + +1.5
257,500 + +0.5
257,501 - +0.4
257,501 - -1.6
257,536 + +1.0
257,555 + +0.2
257,555 + +1.3
257,556 - -1.9
257,563 + +0.3
257,564 - +1.0
257,564 - -1.2
257,906 + GFF2470 0.26 +0.4
257,906 + GFF2470 0.26 -0.2
257,906 + GFF2470 0.26 +0.5
257,907 - GFF2470 0.26 -0.8
257,907 - GFF2470 0.26 -0.6
257,907 - GFF2470 0.26 -1.8
258,084 - GFF2470 0.39 -1.8
258,312 - GFF2470 0.56 +0.4
258,323 + GFF2470 0.57 -0.4
258,324 - GFF2470 0.57 -1.1
258,496 + GFF2470 0.70 +0.7

Or see this region's nucleotide sequence