Strain Fitness in Pseudomonas sp. DMC3 around GFF2466

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2464 and GFF2465 are separated by 3 nucleotidesGFF2465 and GFF2466 are separated by 3 nucleotidesGFF2466 and GFF2467 are separated by 105 nucleotidesGFF2467 and GFF2468 are separated by 59 nucleotides GFF2464 - Flagellar biosynthetic protein FliQ, at 251,398 to 251,667 GFF2464 GFF2465 - Flagellar biosynthetic protein FliR, at 251,671 to 252,456 GFF2465 GFF2466 - Flagellar biosynthetic protein FlhB, at 252,460 to 253,599 GFF2466 GFF2467 - hypothetical protein, at 253,705 to 254,382 GFF2467 GFF2468 - hypothetical protein, at 254,442 to 254,801 GFF2468 Position (kb) 252 253 254Strain fitness (log2 ratio) -2 -1 0 1 2 3at 251.463 kb on + strand, within GFF2464at 251.463 kb on + strand, within GFF2464at 251.623 kb on + strand, within GFF2464at 251.623 kb on + strand, within GFF2464at 251.623 kb on + strand, within GFF2464at 251.623 kb on + strand, within GFF2464at 251.623 kb on + strand, within GFF2464at 251.623 kb on + strand, within GFF2464at 251.623 kb on + strand, within GFF2464at 251.623 kb on + strand, within GFF2464at 251.624 kb on - strand, within GFF2464at 251.624 kb on - strand, within GFF2464at 251.624 kb on - strand, within GFF2464at 251.624 kb on - strand, within GFF2464at 251.624 kb on - strand, within GFF2464at 251.624 kb on - strand, within GFF2464at 251.638 kb on + strand, within GFF2464at 251.813 kb on - strand, within GFF2465at 251.813 kb on - strand, within GFF2465at 251.813 kb on - strand, within GFF2465at 251.813 kb on - strand, within GFF2465at 252.184 kb on + strand, within GFF2465at 252.184 kb on + strand, within GFF2465at 252.185 kb on - strand, within GFF2465at 252.185 kb on - strand, within GFF2465at 252.266 kb on + strand, within GFF2465at 252.267 kb on - strand, within GFF2465at 252.432 kb on - strandat 252.927 kb on + strand, within GFF2466at 252.928 kb on - strand, within GFF2466at 252.928 kb on - strand, within GFF2466at 252.928 kb on - strand, within GFF2466at 253.100 kb on + strand, within GFF2466at 253.279 kb on + strand, within GFF2466at 253.429 kb on + strand, within GFF2466at 253.429 kb on + strand, within GFF2466at 253.429 kb on + strand, within GFF2466at 253.429 kb on + strand, within GFF2466at 253.430 kb on - strand, within GFF2466at 253.432 kb on + strand, within GFF2466at 253.432 kb on + strand, within GFF2466at 253.433 kb on - strand, within GFF2466at 253.433 kb on - strand, within GFF2466at 253.471 kb on + strand, within GFF2466at 253.471 kb on + strand, within GFF2466at 253.499 kb on - strandat 253.648 kb on - strandat 253.673 kb on + strandat 253.673 kb on + strandat 253.673 kb on + strandat 253.674 kb on - strandat 253.674 kb on - strandat 253.674 kb on - strandat 253.687 kb on + strandat 253.729 kb on + strandat 253.729 kb on + strandat 253.729 kb on + strandat 253.729 kb on + strandat 253.730 kb on - strandat 253.730 kb on - strandat 253.730 kb on - strandat 253.731 kb on + strandat 253.731 kb on + strandat 253.732 kb on - strandat 253.759 kb on + strandat 253.759 kb on + strandat 253.759 kb on + strandat 253.760 kb on - strandat 253.802 kb on + strand, within GFF2467at 253.802 kb on + strand, within GFF2467at 253.802 kb on + strand, within GFF2467at 253.803 kb on - strand, within GFF2467at 253.803 kb on - strand, within GFF2467at 253.803 kb on - strand, within GFF2467at 253.803 kb on - strand, within GFF2467at 253.803 kb on - strand, within GFF2467at 253.803 kb on - strand, within GFF2467at 253.803 kb on - strand, within GFF2467at 253.808 kb on - strand, within GFF2467at 253.808 kb on - strand, within GFF2467at 253.808 kb on - strand, within GFF2467at 253.867 kb on + strand, within GFF2467at 253.867 kb on + strand, within GFF2467at 253.867 kb on + strand, within GFF2467at 253.868 kb on - strand, within GFF2467at 253.868 kb on - strand, within GFF2467at 253.868 kb on - strand, within GFF2467at 253.868 kb on - strand, within GFF2467at 253.868 kb on - strand, within GFF2467at 253.869 kb on + strand, within GFF2467at 253.870 kb on - strand, within GFF2467at 253.870 kb on - strand, within GFF2467at 253.880 kb on - strand, within GFF2467at 253.937 kb on - strand, within GFF2467at 253.937 kb on - strand, within GFF2467at 253.942 kb on + strand, within GFF2467at 253.942 kb on + strand, within GFF2467at 253.942 kb on + strand, within GFF2467at 253.942 kb on + strand, within GFF2467at 253.943 kb on - strand, within GFF2467at 253.943 kb on - strand, within GFF2467at 253.943 kb on - strand, within GFF2467at 253.943 kb on - strand, within GFF2467at 253.943 kb on - strand, within GFF2467at 253.945 kb on - strand, within GFF2467at 253.945 kb on - strand, within GFF2467at 253.948 kb on + strand, within GFF2467at 253.949 kb on - strand, within GFF2467at 253.949 kb on - strand, within GFF2467at 253.949 kb on - strand, within GFF2467at 253.949 kb on - strand, within GFF2467at 253.949 kb on - strand, within GFF2467at 253.971 kb on + strand, within GFF2467at 253.972 kb on - strand, within GFF2467at 254.018 kb on - strand, within GFF2467at 254.020 kb on + strand, within GFF2467at 254.020 kb on + strand, within GFF2467at 254.020 kb on + strand, within GFF2467at 254.020 kb on + strand, within GFF2467at 254.020 kb on + strand, within GFF2467at 254.020 kb on + strand, within GFF2467at 254.021 kb on - strand, within GFF2467at 254.021 kb on - strand, within GFF2467at 254.021 kb on - strand, within GFF2467at 254.021 kb on - strand, within GFF2467at 254.021 kb on - strand, within GFF2467at 254.021 kb on - strand, within GFF2467at 254.021 kb on - strand, within GFF2467at 254.021 kb on - strand, within GFF2467at 254.165 kb on + strand, within GFF2467at 254.166 kb on - strand, within GFF2467at 254.193 kb on - strand, within GFF2467at 254.260 kb on + strand, within GFF2467at 254.260 kb on + strand, within GFF2467at 254.260 kb on + strand, within GFF2467at 254.260 kb on + strand, within GFF2467at 254.260 kb on + strand, within GFF2467at 254.260 kb on + strand, within GFF2467at 254.260 kb on + strand, within GFF2467at 254.260 kb on + strand, within GFF2467at 254.261 kb on - strand, within GFF2467at 254.261 kb on - strand, within GFF2467at 254.261 kb on - strand, within GFF2467at 254.261 kb on - strand, within GFF2467at 254.279 kb on + strand, within GFF2467at 254.317 kb on + strandat 254.317 kb on + strandat 254.317 kb on + strandat 254.317 kb on + strandat 254.318 kb on - strandat 254.318 kb on - strandat 254.318 kb on - strandat 254.318 kb on - strandat 254.318 kb on - strandat 254.318 kb on - strandat 254.318 kb on - strandat 254.318 kb on - strandat 254.349 kb on + strandat 254.350 kb on - strandat 254.388 kb on + strandat 254.389 kb on - strandat 254.389 kb on - strandat 254.443 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
251,463 + GFF2464 0.24 +0.1
251,463 + GFF2464 0.24 -0.0
251,623 + GFF2464 0.83 +1.7
251,623 + GFF2464 0.83 +1.2
251,623 + GFF2464 0.83 +0.5
251,623 + GFF2464 0.83 +1.1
251,623 + GFF2464 0.83 +0.2
251,623 + GFF2464 0.83 +0.4
251,623 + GFF2464 0.83 +0.3
251,623 + GFF2464 0.83 +1.2
251,624 - GFF2464 0.84 +0.4
251,624 - GFF2464 0.84 +0.2
251,624 - GFF2464 0.84 -0.6
251,624 - GFF2464 0.84 +0.4
251,624 - GFF2464 0.84 +1.7
251,624 - GFF2464 0.84 +0.7
251,638 + GFF2464 0.89 +0.4
251,813 - GFF2465 0.18 +0.8
251,813 - GFF2465 0.18 +0.1
251,813 - GFF2465 0.18 +1.0
251,813 - GFF2465 0.18 +0.5
252,184 + GFF2465 0.65 +2.0
252,184 + GFF2465 0.65 -0.3
252,185 - GFF2465 0.65 +0.9
252,185 - GFF2465 0.65 +1.3
252,266 + GFF2465 0.76 +0.3
252,267 - GFF2465 0.76 +1.0
252,432 - +0.2
252,927 + GFF2466 0.41 +2.2
252,928 - GFF2466 0.41 +0.4
252,928 - GFF2466 0.41 -1.1
252,928 - GFF2466 0.41 +0.4
253,100 + GFF2466 0.56 +1.0
253,279 + GFF2466 0.72 +0.2
253,429 + GFF2466 0.85 +0.5
253,429 + GFF2466 0.85 -0.2
253,429 + GFF2466 0.85 +1.5
253,429 + GFF2466 0.85 +0.7
253,430 - GFF2466 0.85 -0.1
253,432 + GFF2466 0.85 +0.3
253,432 + GFF2466 0.85 +0.6
253,433 - GFF2466 0.85 +1.3
253,433 - GFF2466 0.85 +0.7
253,471 + GFF2466 0.89 +0.2
253,471 + GFF2466 0.89 +1.6
253,499 - +1.5
253,648 - +0.3
253,673 + +0.1
253,673 + -0.7
253,673 + +0.4
253,674 - -1.5
253,674 - +0.3
253,674 - -1.1
253,687 + -0.3
253,729 + +0.6
253,729 + -0.2
253,729 + +0.0
253,729 + +0.8
253,730 - +0.1
253,730 - +0.2
253,730 - +0.4
253,731 + -0.0
253,731 + -1.1
253,732 - -0.6
253,759 + -0.1
253,759 + +0.3
253,759 + -0.0
253,760 - -0.7
253,802 + GFF2467 0.14 -0.5
253,802 + GFF2467 0.14 -1.0
253,802 + GFF2467 0.14 -0.0
253,803 - GFF2467 0.14 -0.4
253,803 - GFF2467 0.14 -0.3
253,803 - GFF2467 0.14 -0.5
253,803 - GFF2467 0.14 +1.4
253,803 - GFF2467 0.14 +0.6
253,803 - GFF2467 0.14 +0.8
253,803 - GFF2467 0.14 -0.1
253,808 - GFF2467 0.15 +0.2
253,808 - GFF2467 0.15 -0.1
253,808 - GFF2467 0.15 +0.2
253,867 + GFF2467 0.24 -0.4
253,867 + GFF2467 0.24 -1.3
253,867 + GFF2467 0.24 -0.2
253,868 - GFF2467 0.24 -0.7
253,868 - GFF2467 0.24 -0.1
253,868 - GFF2467 0.24 -0.0
253,868 - GFF2467 0.24 -0.8
253,868 - GFF2467 0.24 -0.8
253,869 + GFF2467 0.24 +0.4
253,870 - GFF2467 0.24 +0.6
253,870 - GFF2467 0.24 -0.4
253,880 - GFF2467 0.26 +0.4
253,937 - GFF2467 0.34 -0.6
253,937 - GFF2467 0.34 -0.6
253,942 + GFF2467 0.35 -0.3
253,942 + GFF2467 0.35 -0.0
253,942 + GFF2467 0.35 -0.8
253,942 + GFF2467 0.35 -0.6
253,943 - GFF2467 0.35 -0.2
253,943 - GFF2467 0.35 -0.1
253,943 - GFF2467 0.35 -1.0
253,943 - GFF2467 0.35 -0.7
253,943 - GFF2467 0.35 -0.7
253,945 - GFF2467 0.35 -0.7
253,945 - GFF2467 0.35 +0.0
253,948 + GFF2467 0.36 +0.3
253,949 - GFF2467 0.36 -0.6
253,949 - GFF2467 0.36 +0.8
253,949 - GFF2467 0.36 +0.1
253,949 - GFF2467 0.36 -0.8
253,949 - GFF2467 0.36 +0.4
253,971 + GFF2467 0.39 -1.2
253,972 - GFF2467 0.39 +1.1
254,018 - GFF2467 0.46 +0.4
254,020 + GFF2467 0.46 +1.1
254,020 + GFF2467 0.46 +0.1
254,020 + GFF2467 0.46 -1.2
254,020 + GFF2467 0.46 -0.7
254,020 + GFF2467 0.46 +0.4
254,020 + GFF2467 0.46 +1.4
254,021 - GFF2467 0.47 +2.9
254,021 - GFF2467 0.47 -0.8
254,021 - GFF2467 0.47 -0.1
254,021 - GFF2467 0.47 -1.2
254,021 - GFF2467 0.47 +0.7
254,021 - GFF2467 0.47 -0.2
254,021 - GFF2467 0.47 -1.2
254,021 - GFF2467 0.47 -0.3
254,165 + GFF2467 0.68 -0.6
254,166 - GFF2467 0.68 -0.1
254,193 - GFF2467 0.72 -2.0
254,260 + GFF2467 0.82 +0.4
254,260 + GFF2467 0.82 +0.5
254,260 + GFF2467 0.82 -0.2
254,260 + GFF2467 0.82 +2.6
254,260 + GFF2467 0.82 +0.2
254,260 + GFF2467 0.82 +1.0
254,260 + GFF2467 0.82 +0.4
254,260 + GFF2467 0.82 -1.2
254,261 - GFF2467 0.82 +0.4
254,261 - GFF2467 0.82 +0.2
254,261 - GFF2467 0.82 -0.6
254,261 - GFF2467 0.82 -0.2
254,279 + GFF2467 0.85 -1.1
254,317 + -0.3
254,317 + -0.1
254,317 + +0.0
254,317 + -0.2
254,318 - +0.1
254,318 - -0.6
254,318 - +1.0
254,318 - -0.6
254,318 - +1.1
254,318 - +1.0
254,318 - -0.2
254,318 - +0.1
254,349 + +1.4
254,350 - -1.6
254,388 + +0.0
254,389 - -0.2
254,389 - +0.1
254,443 + -0.9

Or see this region's nucleotide sequence