Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2457 and GFF2458 are separated by 181 nucleotides GFF2458 and GFF2459 are separated by 61 nucleotides GFF2459 and GFF2460 are separated by 9 nucleotides GFF2460 and GFF2461 are separated by 55 nucleotides GFF2461 and GFF2462 are separated by 18 nucleotides GFF2462 and GFF2463 overlap by 1 nucleotides
GFF2457 - hypothetical protein, at 246,489 to 247,856
GFF2457
GFF2458 - hypothetical protein, at 248,038 to 248,133
GFF2458
GFF2459 - hypothetical protein, at 248,195 to 248,698
GFF2459
GFF2460 - Flagellar motor switch protein FliM, at 248,708 to 249,676
GFF2460
GFF2461 - Flagellar motor switch protein FliN, at 249,732 to 250,190
GFF2461
GFF2462 - hypothetical protein, at 250,209 to 250,643
GFF2462
GFF2463 - Flagellar biosynthetic protein FliP, at 250,643 to 251,401
GFF2463
Position (kb) 248
249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 247.845 kb on + strand at 247.846 kb on - strand at 247.846 kb on - strand at 247.848 kb on + strand at 247.848 kb on + strand at 247.848 kb on + strand at 247.848 kb on + strand at 247.849 kb on - strand at 247.849 kb on - strand at 247.849 kb on - strand at 247.849 kb on - strand at 247.929 kb on + strand at 247.929 kb on + strand at 247.930 kb on - strand at 247.930 kb on - strand at 248.039 kb on + strand at 248.039 kb on + strand at 248.039 kb on + strand at 248.039 kb on + strand at 248.039 kb on + strand at 248.039 kb on + strand at 248.039 kb on + strand at 248.040 kb on - strand at 248.040 kb on - strand at 248.040 kb on - strand at 248.040 kb on - strand at 248.040 kb on - strand at 248.040 kb on - strand at 248.040 kb on - strand at 248.100 kb on + strand, within GFF2458 at 248.101 kb on - strand, within GFF2458 at 248.134 kb on - strand at 248.220 kb on + strand at 248.220 kb on + strand at 248.221 kb on - strand at 248.423 kb on + strand, within GFF2459 at 248.423 kb on + strand, within GFF2459 at 248.423 kb on + strand, within GFF2459 at 248.423 kb on + strand, within GFF2459 at 248.423 kb on + strand, within GFF2459 at 248.424 kb on - strand, within GFF2459 at 248.424 kb on - strand, within GFF2459 at 248.447 kb on + strand, within GFF2459 at 248.447 kb on + strand, within GFF2459 at 248.448 kb on - strand, within GFF2459 at 248.696 kb on + strand at 248.696 kb on + strand at 248.696 kb on + strand at 248.696 kb on + strand at 248.696 kb on + strand at 248.697 kb on - strand at 248.778 kb on + strand at 248.779 kb on - strand at 248.779 kb on - strand at 248.819 kb on + strand, within GFF2460 at 248.820 kb on - strand, within GFF2460 at 248.898 kb on - strand, within GFF2460 at 248.898 kb on - strand, within GFF2460 at 248.898 kb on - strand, within GFF2460 at 248.898 kb on - strand, within GFF2460 at 248.981 kb on + strand, within GFF2460 at 248.996 kb on + strand, within GFF2460 at 248.996 kb on + strand, within GFF2460 at 248.996 kb on + strand, within GFF2460 at 248.997 kb on - strand, within GFF2460 at 248.997 kb on - strand, within GFF2460 at 249.239 kb on + strand, within GFF2460 at 249.239 kb on + strand, within GFF2460 at 249.240 kb on - strand, within GFF2460 at 249.240 kb on - strand, within GFF2460 at 249.362 kb on + strand, within GFF2460 at 249.698 kb on - strand at 249.698 kb on - strand at 249.743 kb on + strand at 249.744 kb on - strand at 250.111 kb on + strand, within GFF2461 at 250.112 kb on - strand, within GFF2461 at 250.112 kb on - strand, within GFF2461 at 250.641 kb on + strand at 250.641 kb on + strand at 250.641 kb on + strand at 250.642 kb on - strand at 250.642 kb on - strand at 250.642 kb on - strand at 250.642 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 247,845 + +0.4 247,846 - +0.8 247,846 - +0.4 247,848 + +0.3 247,848 + +0.3 247,848 + +0.7 247,848 + +1.2 247,849 - +0.8 247,849 - +1.6 247,849 - +0.7 247,849 - +0.6 247,929 + -0.8 247,929 + +0.2 247,930 - +0.4 247,930 - -0.6 248,039 + +0.9 248,039 + +0.5 248,039 + -0.6 248,039 + +1.0 248,039 + -0.0 248,039 + -0.2 248,039 + -0.1 248,040 - -0.4 248,040 - +0.2 248,040 - -1.1 248,040 - -0.0 248,040 - -0.5 248,040 - -0.0 248,040 - -0.2 248,100 + GFF2458 0.65 +0.5 248,101 - GFF2458 0.66 +0.6 248,134 - +0.1 248,220 + -1.1 248,220 + +0.5 248,221 - +0.0 248,423 + GFF2459 0.45 +0.6 248,423 + GFF2459 0.45 -0.5 248,423 + GFF2459 0.45 +0.6 248,423 + GFF2459 0.45 +0.4 248,423 + GFF2459 0.45 +0.3 248,424 - GFF2459 0.45 +0.5 248,424 - GFF2459 0.45 +0.3 248,447 + GFF2459 0.50 -3.2 248,447 + GFF2459 0.50 +1.4 248,448 - GFF2459 0.50 -0.6 248,696 + -0.5 248,696 + +0.1 248,696 + +0.2 248,696 + -1.5 248,696 + -0.5 248,697 - +0.8 248,778 + +0.8 248,779 - -0.2 248,779 - +1.1 248,819 + GFF2460 0.11 +0.8 248,820 - GFF2460 0.12 +0.7 248,898 - GFF2460 0.20 +0.2 248,898 - GFF2460 0.20 +0.9 248,898 - GFF2460 0.20 +0.4 248,898 - GFF2460 0.20 -0.1 248,981 + GFF2460 0.28 +0.5 248,996 + GFF2460 0.30 +0.4 248,996 + GFF2460 0.30 -0.2 248,996 + GFF2460 0.30 +0.7 248,997 - GFF2460 0.30 +0.6 248,997 - GFF2460 0.30 +1.7 249,239 + GFF2460 0.55 -0.3 249,239 + GFF2460 0.55 +0.2 249,240 - GFF2460 0.55 +1.6 249,240 - GFF2460 0.55 +0.5 249,362 + GFF2460 0.67 -0.2 249,698 - +0.9 249,698 - +1.0 249,743 + +0.8 249,744 - +0.8 250,111 + GFF2461 0.83 +0.5 250,112 - GFF2461 0.83 +0.2 250,112 - GFF2461 0.83 +0.7 250,641 + -0.6 250,641 + +0.6 250,641 + +0.3 250,642 - +0.1 250,642 - +0.3 250,642 - +1.3 250,642 - -1.4
Or see this region's nucleotide sequence