Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2455 and GFF2456 are separated by 30 nucleotides GFF2456 and GFF2457 are separated by 105 nucleotides GFF2457 and GFF2458 are separated by 181 nucleotides GFF2458 and GFF2459 are separated by 61 nucleotides GFF2459 and GFF2460 are separated by 9 nucleotides
GFF2455 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 244,302 to 246,005
GFF2455
GFF2456 - hypothetical protein, at 246,036 to 246,383
GFF2456
GFF2457 - hypothetical protein, at 246,489 to 247,856
GFF2457
GFF2458 - hypothetical protein, at 248,038 to 248,133
GFF2458
GFF2459 - hypothetical protein, at 248,195 to 248,698
GFF2459
GFF2460 - Flagellar motor switch protein FliM, at 248,708 to 249,676
GFF2460
Position (kb) 246
247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 245.599 kb on + strand, within GFF2455 at 245.599 kb on + strand, within GFF2455 at 245.599 kb on + strand, within GFF2455 at 245.599 kb on + strand, within GFF2455 at 245.599 kb on + strand, within GFF2455 at 245.600 kb on - strand, within GFF2455 at 245.600 kb on - strand, within GFF2455 at 245.600 kb on - strand, within GFF2455 at 245.632 kb on - strand, within GFF2455 at 245.652 kb on + strand, within GFF2455 at 245.653 kb on - strand, within GFF2455 at 245.730 kb on + strand, within GFF2455 at 245.731 kb on - strand, within GFF2455 at 246.004 kb on - strand at 246.052 kb on + strand at 246.052 kb on + strand at 246.052 kb on + strand at 246.052 kb on + strand at 246.052 kb on + strand at 246.053 kb on - strand at 246.053 kb on - strand at 246.053 kb on - strand at 246.053 kb on - strand at 246.053 kb on - strand at 246.053 kb on - strand at 246.053 kb on - strand at 246.099 kb on + strand, within GFF2456 at 246.099 kb on + strand, within GFF2456 at 246.101 kb on + strand, within GFF2456 at 246.198 kb on - strand, within GFF2456 at 246.198 kb on - strand, within GFF2456 at 246.198 kb on - strand, within GFF2456 at 246.198 kb on - strand, within GFF2456 at 246.198 kb on - strand, within GFF2456 at 246.198 kb on - strand, within GFF2456 at 246.338 kb on - strand, within GFF2456 at 246.348 kb on + strand, within GFF2456 at 246.348 kb on + strand, within GFF2456 at 246.348 kb on + strand, within GFF2456 at 246.348 kb on + strand, within GFF2456 at 246.349 kb on - strand at 246.349 kb on - strand at 246.349 kb on - strand at 246.456 kb on + strand at 246.457 kb on - strand at 246.457 kb on - strand at 246.457 kb on - strand at 246.460 kb on + strand at 246.460 kb on + strand at 246.460 kb on + strand at 246.460 kb on + strand at 246.460 kb on + strand at 246.461 kb on - strand at 246.461 kb on - strand at 246.461 kb on - strand at 246.461 kb on - strand at 246.461 kb on - strand at 246.508 kb on + strand at 246.508 kb on + strand at 246.508 kb on + strand at 246.508 kb on + strand at 246.508 kb on + strand at 246.508 kb on + strand at 246.508 kb on + strand at 246.508 kb on + strand at 246.508 kb on + strand at 246.508 kb on + strand at 246.508 kb on + strand at 246.509 kb on - strand at 246.509 kb on - strand at 246.509 kb on - strand at 246.509 kb on - strand at 246.509 kb on - strand at 246.509 kb on - strand at 246.509 kb on - strand at 246.509 kb on - strand at 246.509 kb on - strand at 246.509 kb on - strand at 246.509 kb on - strand at 246.833 kb on - strand, within GFF2457 at 246.863 kb on - strand, within GFF2457 at 246.863 kb on - strand, within GFF2457 at 247.220 kb on + strand, within GFF2457 at 247.221 kb on - strand, within GFF2457 at 247.449 kb on + strand, within GFF2457 at 247.449 kb on + strand, within GFF2457 at 247.449 kb on + strand, within GFF2457 at 247.449 kb on + strand, within GFF2457 at 247.449 kb on + strand, within GFF2457 at 247.449 kb on + strand, within GFF2457 at 247.449 kb on + strand, within GFF2457 at 247.449 kb on + strand, within GFF2457 at 247.450 kb on - strand, within GFF2457 at 247.450 kb on - strand, within GFF2457 at 247.450 kb on - strand, within GFF2457 at 247.450 kb on - strand, within GFF2457 at 247.450 kb on - strand, within GFF2457 at 247.450 kb on - strand, within GFF2457 at 247.450 kb on - strand, within GFF2457 at 247.450 kb on - strand, within GFF2457 at 247.845 kb on + strand at 247.846 kb on - strand at 247.846 kb on - strand at 247.848 kb on + strand at 247.848 kb on + strand at 247.848 kb on + strand at 247.848 kb on + strand at 247.849 kb on - strand at 247.849 kb on - strand at 247.849 kb on - strand at 247.849 kb on - strand at 247.929 kb on + strand at 247.929 kb on + strand at 247.930 kb on - strand at 247.930 kb on - strand at 248.039 kb on + strand at 248.039 kb on + strand at 248.039 kb on + strand at 248.039 kb on + strand at 248.039 kb on + strand at 248.039 kb on + strand at 248.039 kb on + strand at 248.040 kb on - strand at 248.040 kb on - strand at 248.040 kb on - strand at 248.040 kb on - strand at 248.040 kb on - strand at 248.040 kb on - strand at 248.040 kb on - strand at 248.100 kb on + strand, within GFF2458 at 248.101 kb on - strand, within GFF2458 at 248.134 kb on - strand at 248.220 kb on + strand at 248.220 kb on + strand at 248.221 kb on - strand at 248.423 kb on + strand, within GFF2459 at 248.423 kb on + strand, within GFF2459 at 248.423 kb on + strand, within GFF2459 at 248.423 kb on + strand, within GFF2459 at 248.423 kb on + strand, within GFF2459 at 248.424 kb on - strand, within GFF2459 at 248.424 kb on - strand, within GFF2459 at 248.447 kb on + strand, within GFF2459 at 248.447 kb on + strand, within GFF2459 at 248.448 kb on - strand, within GFF2459 at 248.696 kb on + strand at 248.696 kb on + strand at 248.696 kb on + strand at 248.696 kb on + strand at 248.696 kb on + strand at 248.697 kb on - strand at 248.778 kb on + strand at 248.779 kb on - strand at 248.779 kb on - strand at 248.819 kb on + strand, within GFF2460 at 248.820 kb on - strand, within GFF2460
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 245,599 + GFF2455 0.76 +1.7 245,599 + GFF2455 0.76 -0.1 245,599 + GFF2455 0.76 +1.2 245,599 + GFF2455 0.76 -0.8 245,599 + GFF2455 0.76 +0.0 245,600 - GFF2455 0.76 -0.1 245,600 - GFF2455 0.76 +0.9 245,600 - GFF2455 0.76 +1.8 245,632 - GFF2455 0.78 +0.2 245,652 + GFF2455 0.79 +0.2 245,653 - GFF2455 0.79 +0.3 245,730 + GFF2455 0.84 +2.0 245,731 - GFF2455 0.84 -0.1 246,004 - -0.7 246,052 + -0.0 246,052 + -1.0 246,052 + -0.5 246,052 + -1.5 246,052 + -1.3 246,053 - -0.3 246,053 - -1.1 246,053 - -1.9 246,053 - +0.0 246,053 - -0.0 246,053 - +0.0 246,053 - -0.3 246,099 + GFF2456 0.18 -0.8 246,099 + GFF2456 0.18 +1.3 246,101 + GFF2456 0.19 -1.9 246,198 - GFF2456 0.47 +0.1 246,198 - GFF2456 0.47 -0.4 246,198 - GFF2456 0.47 -0.5 246,198 - GFF2456 0.47 -0.4 246,198 - GFF2456 0.47 -1.1 246,198 - GFF2456 0.47 -1.1 246,338 - GFF2456 0.87 -0.8 246,348 + GFF2456 0.90 +0.2 246,348 + GFF2456 0.90 +0.4 246,348 + GFF2456 0.90 -1.7 246,348 + GFF2456 0.90 -1.6 246,349 - -0.6 246,349 - -0.3 246,349 - -0.3 246,456 + +0.0 246,457 - -1.0 246,457 - +0.4 246,457 - +0.4 246,460 + -0.1 246,460 + -0.6 246,460 + -0.1 246,460 + -0.1 246,460 + -1.2 246,461 - -1.1 246,461 - -0.6 246,461 - -1.4 246,461 - -1.6 246,461 - -0.2 246,508 + -0.0 246,508 + +0.3 246,508 + +1.1 246,508 + -1.6 246,508 + -0.6 246,508 + +0.2 246,508 + +0.5 246,508 + +0.3 246,508 + +0.7 246,508 + -0.0 246,508 + -0.5 246,509 - -0.8 246,509 - -0.6 246,509 - -1.2 246,509 - +0.2 246,509 - -0.6 246,509 - -0.7 246,509 - -0.7 246,509 - +0.1 246,509 - -0.3 246,509 - +1.1 246,509 - -0.2 246,833 - GFF2457 0.25 -0.1 246,863 - GFF2457 0.27 +0.2 246,863 - GFF2457 0.27 +0.4 247,220 + GFF2457 0.53 -0.0 247,221 - GFF2457 0.54 -0.2 247,449 + GFF2457 0.70 +0.5 247,449 + GFF2457 0.70 +0.5 247,449 + GFF2457 0.70 +0.8 247,449 + GFF2457 0.70 +0.8 247,449 + GFF2457 0.70 +0.6 247,449 + GFF2457 0.70 +0.6 247,449 + GFF2457 0.70 +1.3 247,449 + GFF2457 0.70 -0.1 247,450 - GFF2457 0.70 +2.0 247,450 - GFF2457 0.70 +1.0 247,450 - GFF2457 0.70 +0.4 247,450 - GFF2457 0.70 +0.2 247,450 - GFF2457 0.70 -0.2 247,450 - GFF2457 0.70 +1.4 247,450 - GFF2457 0.70 +0.7 247,450 - GFF2457 0.70 +0.3 247,845 + +0.4 247,846 - +0.8 247,846 - +0.4 247,848 + +0.3 247,848 + +0.3 247,848 + +0.7 247,848 + +1.2 247,849 - +0.8 247,849 - +1.6 247,849 - +0.7 247,849 - +0.6 247,929 + -0.8 247,929 + +0.2 247,930 - +0.4 247,930 - -0.6 248,039 + +0.9 248,039 + +0.5 248,039 + -0.6 248,039 + +1.0 248,039 + -0.0 248,039 + -0.2 248,039 + -0.1 248,040 - -0.4 248,040 - +0.2 248,040 - -1.1 248,040 - -0.0 248,040 - -0.5 248,040 - -0.0 248,040 - -0.2 248,100 + GFF2458 0.65 +0.5 248,101 - GFF2458 0.66 +0.6 248,134 - +0.1 248,220 + -1.1 248,220 + +0.5 248,221 - +0.0 248,423 + GFF2459 0.45 +0.6 248,423 + GFF2459 0.45 -0.5 248,423 + GFF2459 0.45 +0.6 248,423 + GFF2459 0.45 +0.4 248,423 + GFF2459 0.45 +0.3 248,424 - GFF2459 0.45 +0.5 248,424 - GFF2459 0.45 +0.3 248,447 + GFF2459 0.50 -3.2 248,447 + GFF2459 0.50 +1.4 248,448 - GFF2459 0.50 -0.6 248,696 + -0.5 248,696 + +0.1 248,696 + +0.2 248,696 + -1.5 248,696 + -0.5 248,697 - +0.8 248,778 + +0.8 248,779 - -0.2 248,779 - +1.1 248,819 + GFF2460 0.11 +0.8 248,820 - GFF2460 0.12 +0.7
Or see this region's nucleotide sequence