Strain Fitness in Pseudomonas sp. DMC3 around GFF2453

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2452 and GFF2453 are separated by 6 nucleotidesGFF2453 and GFF2454 are separated by 190 nucleotidesGFF2454 and GFF2455 are separated by 5 nucleotides GFF2452 - Flagellum-specific ATP synthase, at 241,986 to 243,344 GFF2452 GFF2453 - hypothetical protein, at 243,351 to 243,800 GFF2453 GFF2454 - STAS-domain containing protein, at 243,991 to 244,296 GFF2454 GFF2455 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 244,302 to 246,005 GFF2455 Position (kb) 243 244Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 242.526 kb on - strand, within GFF2452at 242.526 kb on - strand, within GFF2452at 242.613 kb on - strand, within GFF2452at 242.613 kb on - strand, within GFF2452at 242.702 kb on + strand, within GFF2452at 242.718 kb on + strand, within GFF2452at 242.718 kb on + strand, within GFF2452at 242.718 kb on + strand, within GFF2452at 242.718 kb on + strand, within GFF2452at 242.718 kb on + strand, within GFF2452at 242.718 kb on + strand, within GFF2452at 242.718 kb on + strand, within GFF2452at 242.719 kb on - strand, within GFF2452at 242.719 kb on - strand, within GFF2452at 242.719 kb on - strand, within GFF2452at 242.719 kb on - strand, within GFF2452at 242.719 kb on - strand, within GFF2452at 242.719 kb on - strand, within GFF2452at 242.719 kb on - strand, within GFF2452at 242.941 kb on - strand, within GFF2452at 242.947 kb on + strand, within GFF2452at 242.947 kb on + strand, within GFF2452at 242.947 kb on + strand, within GFF2452at 242.947 kb on + strand, within GFF2452at 242.948 kb on - strand, within GFF2452at 243.014 kb on + strand, within GFF2452at 243.014 kb on + strand, within GFF2452at 243.015 kb on - strand, within GFF2452at 243.100 kb on + strand, within GFF2452at 243.132 kb on + strand, within GFF2452at 243.133 kb on - strand, within GFF2452at 243.156 kb on + strand, within GFF2452at 243.156 kb on + strand, within GFF2452at 243.192 kb on + strand, within GFF2452at 243.193 kb on - strand, within GFF2452at 243.193 kb on - strand, within GFF2452at 243.193 kb on - strand, within GFF2452at 243.256 kb on - strandat 243.307 kb on - strandat 243.435 kb on + strand, within GFF2453at 243.435 kb on + strand, within GFF2453at 243.436 kb on - strand, within GFF2453at 243.436 kb on - strand, within GFF2453at 243.501 kb on + strand, within GFF2453at 243.864 kb on + strandat 243.864 kb on + strandat 243.865 kb on - strandat 243.950 kb on + strandat 243.950 kb on + strandat 243.950 kb on + strandat 243.951 kb on - strandat 243.951 kb on - strandat 243.951 kb on - strandat 243.959 kb on + strandat 243.959 kb on + strandat 243.959 kb on + strandat 243.959 kb on + strandat 243.959 kb on + strandat 243.960 kb on - strandat 244.090 kb on + strand, within GFF2454at 244.090 kb on + strand, within GFF2454at 244.091 kb on - strand, within GFF2454at 244.091 kb on - strand, within GFF2454at 244.091 kb on - strand, within GFF2454at 244.091 kb on - strand, within GFF2454at 244.143 kb on + strand, within GFF2454at 244.143 kb on + strand, within GFF2454at 244.143 kb on + strand, within GFF2454at 244.143 kb on + strand, within GFF2454at 244.143 kb on + strand, within GFF2454at 244.144 kb on - strand, within GFF2454at 244.144 kb on - strand, within GFF2454at 244.144 kb on - strand, within GFF2454at 244.144 kb on - strand, within GFF2454at 244.144 kb on - strand, within GFF2454at 244.147 kb on + strand, within GFF2454at 244.147 kb on + strand, within GFF2454at 244.147 kb on + strand, within GFF2454at 244.147 kb on + strand, within GFF2454at 244.148 kb on - strand, within GFF2454at 244.148 kb on - strand, within GFF2454at 244.148 kb on - strand, within GFF2454at 244.148 kb on - strand, within GFF2454at 244.148 kb on - strand, within GFF2454at 244.148 kb on - strand, within GFF2454at 244.148 kb on - strand, within GFF2454at 244.148 kb on - strand, within GFF2454at 244.148 kb on - strand, within GFF2454at 244.477 kb on + strand, within GFF2455at 244.645 kb on + strand, within GFF2455at 244.645 kb on + strand, within GFF2455at 244.645 kb on + strand, within GFF2455at 244.645 kb on + strand, within GFF2455at 244.737 kb on + strand, within GFF2455at 244.738 kb on - strand, within GFF2455at 244.738 kb on - strand, within GFF2455at 244.738 kb on - strand, within GFF2455at 244.738 kb on - strand, within GFF2455at 244.738 kb on - strand, within GFF2455at 244.741 kb on + strand, within GFF2455at 244.741 kb on + strand, within GFF2455at 244.741 kb on + strand, within GFF2455at 244.741 kb on + strand, within GFF2455at 244.742 kb on - strand, within GFF2455at 244.742 kb on - strand, within GFF2455at 244.742 kb on - strand, within GFF2455at 244.742 kb on - strand, within GFF2455at 244.742 kb on - strand, within GFF2455at 244.742 kb on - strand, within GFF2455at 244.742 kb on - strand, within GFF2455at 244.742 kb on - strand, within GFF2455at 244.742 kb on - strand, within GFF2455at 244.742 kb on - strand, within GFF2455

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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242,526 - GFF2452 0.40 +1.0
242,526 - GFF2452 0.40 +0.2
242,613 - GFF2452 0.46 +1.0
242,613 - GFF2452 0.46 +2.2
242,702 + GFF2452 0.53 +0.1
242,718 + GFF2452 0.54 +0.8
242,718 + GFF2452 0.54 +0.8
242,718 + GFF2452 0.54 -0.2
242,718 + GFF2452 0.54 +0.7
242,718 + GFF2452 0.54 +1.2
242,718 + GFF2452 0.54 +0.3
242,718 + GFF2452 0.54 +1.1
242,719 - GFF2452 0.54 +1.2
242,719 - GFF2452 0.54 +1.3
242,719 - GFF2452 0.54 -0.1
242,719 - GFF2452 0.54 +0.1
242,719 - GFF2452 0.54 +1.9
242,719 - GFF2452 0.54 +0.9
242,719 - GFF2452 0.54 +2.3
242,941 - GFF2452 0.70 +0.7
242,947 + GFF2452 0.71 +0.4
242,947 + GFF2452 0.71 +1.0
242,947 + GFF2452 0.71 +1.3
242,947 + GFF2452 0.71 +1.0
242,948 - GFF2452 0.71 +1.0
243,014 + GFF2452 0.76 +0.6
243,014 + GFF2452 0.76 +0.8
243,015 - GFF2452 0.76 +0.7
243,100 + GFF2452 0.82 +1.2
243,132 + GFF2452 0.84 +1.2
243,133 - GFF2452 0.84 +0.5
243,156 + GFF2452 0.86 +1.4
243,156 + GFF2452 0.86 +1.1
243,192 + GFF2452 0.89 +1.2
243,193 - GFF2452 0.89 +0.9
243,193 - GFF2452 0.89 +1.2
243,193 - GFF2452 0.89 +1.7
243,256 - +1.7
243,307 - +1.0
243,435 + GFF2453 0.19 +0.6
243,435 + GFF2453 0.19 +0.5
243,436 - GFF2453 0.19 +0.6
243,436 - GFF2453 0.19 +0.9
243,501 + GFF2453 0.33 +1.0
243,864 + +0.4
243,864 + +0.5
243,865 - -1.1
243,950 + -0.1
243,950 + -0.6
243,950 + -0.3
243,951 - -3.1
243,951 - -1.5
243,951 - -0.6
243,959 + -0.6
243,959 + -0.5
243,959 + +1.6
243,959 + -0.4
243,959 + +0.3
243,960 - -2.3
244,090 + GFF2454 0.32 -0.6
244,090 + GFF2454 0.32 -0.4
244,091 - GFF2454 0.33 -1.0
244,091 - GFF2454 0.33 -1.0
244,091 - GFF2454 0.33 -1.9
244,091 - GFF2454 0.33 -0.9
244,143 + GFF2454 0.50 -0.9
244,143 + GFF2454 0.50 -1.9
244,143 + GFF2454 0.50 -0.4
244,143 + GFF2454 0.50 -1.7
244,143 + GFF2454 0.50 -1.8
244,144 - GFF2454 0.50 -3.7
244,144 - GFF2454 0.50 -1.3
244,144 - GFF2454 0.50 -1.3
244,144 - GFF2454 0.50 -2.9
244,144 - GFF2454 0.50 -0.7
244,147 + GFF2454 0.51 -0.9
244,147 + GFF2454 0.51 -1.4
244,147 + GFF2454 0.51 -1.2
244,147 + GFF2454 0.51 -1.1
244,148 - GFF2454 0.51 -2.3
244,148 - GFF2454 0.51 -3.0
244,148 - GFF2454 0.51 +0.1
244,148 - GFF2454 0.51 -0.6
244,148 - GFF2454 0.51 +0.2
244,148 - GFF2454 0.51 -1.4
244,148 - GFF2454 0.51 +0.4
244,148 - GFF2454 0.51 -1.5
244,148 - GFF2454 0.51 -1.8
244,477 + GFF2455 0.10 -1.0
244,645 + GFF2455 0.20 -0.4
244,645 + GFF2455 0.20 +0.8
244,645 + GFF2455 0.20 +1.1
244,645 + GFF2455 0.20 +1.0
244,737 + GFF2455 0.26 -0.3
244,738 - GFF2455 0.26 -0.7
244,738 - GFF2455 0.26 +2.8
244,738 - GFF2455 0.26 -0.1
244,738 - GFF2455 0.26 +0.5
244,738 - GFF2455 0.26 +0.1
244,741 + GFF2455 0.26 +0.0
244,741 + GFF2455 0.26 -0.3
244,741 + GFF2455 0.26 +0.6
244,741 + GFF2455 0.26 +0.3
244,742 - GFF2455 0.26 +0.1
244,742 - GFF2455 0.26 +0.1
244,742 - GFF2455 0.26 -0.9
244,742 - GFF2455 0.26 -0.3
244,742 - GFF2455 0.26 -0.7
244,742 - GFF2455 0.26 +0.3
244,742 - GFF2455 0.26 -0.0
244,742 - GFF2455 0.26 +0.5
244,742 - GFF2455 0.26 -0.1
244,742 - GFF2455 0.26 +0.7

Or see this region's nucleotide sequence