Strain Fitness in Pseudomonas sp. DMC3 around GFF2449

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2447 and GFF2448 are separated by 128 nucleotidesGFF2448 and GFF2449 are separated by 14 nucleotidesGFF2449 and GFF2450 overlap by 8 nucleotides GFF2447 - Regulatory protein AtoC, at 236,531 to 237,913 GFF2447 GFF2448 - Flagellar hook-basal body complex protein FliE, at 238,042 to 238,371 GFF2448 GFF2449 - Flagellar M-ring protein, at 238,386 to 240,173 GFF2449 GFF2450 - Flagellar motor switch protein FliG, at 240,166 to 241,185 GFF2450 Position (kb) 238 239 240 241Strain fitness (log2 ratio) -2 -1 0 1 2at 237.395 kb on + strand, within GFF2447at 237.493 kb on + strand, within GFF2447at 237.494 kb on - strand, within GFF2447at 237.494 kb on - strand, within GFF2447at 237.494 kb on - strand, within GFF2447at 237.896 kb on + strandat 237.897 kb on - strandat 237.897 kb on - strandat 237.897 kb on - strandat 237.962 kb on - strandat 237.984 kb on - strandat 237.984 kb on - strandat 237.984 kb on - strandat 237.984 kb on - strandat 237.984 kb on - strandat 237.984 kb on - strandat 238.037 kb on - strandat 238.037 kb on - strandat 238.053 kb on + strandat 238.053 kb on + strandat 238.053 kb on + strandat 238.063 kb on - strandat 238.116 kb on + strand, within GFF2448at 238.116 kb on + strand, within GFF2448at 238.117 kb on - strand, within GFF2448at 238.117 kb on - strand, within GFF2448at 238.185 kb on + strand, within GFF2448at 238.185 kb on + strand, within GFF2448at 238.186 kb on - strand, within GFF2448at 238.186 kb on - strand, within GFF2448at 238.342 kb on + strandat 238.342 kb on + strandat 238.342 kb on + strandat 238.342 kb on + strandat 238.343 kb on - strandat 238.343 kb on - strandat 238.370 kb on - strandat 238.380 kb on + strandat 238.380 kb on + strandat 238.380 kb on + strandat 238.380 kb on + strandat 238.381 kb on - strandat 238.381 kb on - strandat 238.590 kb on + strand, within GFF2449at 238.590 kb on + strand, within GFF2449at 238.656 kb on + strand, within GFF2449at 238.656 kb on + strand, within GFF2449at 238.656 kb on + strand, within GFF2449at 238.656 kb on + strand, within GFF2449at 238.657 kb on - strand, within GFF2449at 238.657 kb on - strand, within GFF2449at 238.657 kb on - strand, within GFF2449at 238.657 kb on - strand, within GFF2449at 238.657 kb on - strand, within GFF2449at 238.657 kb on - strand, within GFF2449at 238.657 kb on - strand, within GFF2449at 238.663 kb on + strand, within GFF2449at 238.663 kb on + strand, within GFF2449at 238.663 kb on + strand, within GFF2449at 238.663 kb on + strand, within GFF2449at 238.663 kb on + strand, within GFF2449at 238.663 kb on + strand, within GFF2449at 238.663 kb on + strand, within GFF2449at 238.663 kb on + strand, within GFF2449at 238.663 kb on + strand, within GFF2449at 238.663 kb on + strand, within GFF2449at 238.664 kb on - strand, within GFF2449at 238.664 kb on - strand, within GFF2449at 238.664 kb on - strand, within GFF2449at 238.664 kb on - strand, within GFF2449at 238.664 kb on - strand, within GFF2449at 238.664 kb on - strand, within GFF2449at 238.664 kb on - strand, within GFF2449at 239.204 kb on - strand, within GFF2449at 239.830 kb on - strand, within GFF2449at 239.891 kb on - strand, within GFF2449at 240.078 kb on + strandat 240.079 kb on - strandat 240.112 kb on + strandat 240.113 kb on - strandat 240.113 kb on - strandat 240.412 kb on + strand, within GFF2450at 240.412 kb on + strand, within GFF2450at 240.553 kb on + strand, within GFF2450at 240.589 kb on + strand, within GFF2450at 240.589 kb on + strand, within GFF2450at 240.590 kb on - strand, within GFF2450at 240.636 kb on + strand, within GFF2450at 240.636 kb on + strand, within GFF2450at 240.637 kb on - strand, within GFF2450at 240.637 kb on - strand, within GFF2450at 241.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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237,395 + GFF2447 0.62 +0.3
237,493 + GFF2447 0.70 +0.0
237,494 - GFF2447 0.70 -1.0
237,494 - GFF2447 0.70 +0.2
237,494 - GFF2447 0.70 +0.2
237,896 + -0.1
237,897 - -0.6
237,897 - -0.8
237,897 - +1.0
237,962 - +0.5
237,984 - +1.4
237,984 - +0.0
237,984 - +0.6
237,984 - +0.3
237,984 - -0.4
237,984 - +0.1
238,037 - +1.8
238,037 - +0.6
238,053 + +1.4
238,053 + +0.4
238,053 + +0.7
238,063 - +0.3
238,116 + GFF2448 0.22 +0.2
238,116 + GFF2448 0.22 +0.2
238,117 - GFF2448 0.23 +1.1
238,117 - GFF2448 0.23 +0.8
238,185 + GFF2448 0.43 +0.7
238,185 + GFF2448 0.43 +0.9
238,186 - GFF2448 0.44 +0.4
238,186 - GFF2448 0.44 +0.7
238,342 + +1.2
238,342 + +1.1
238,342 + -0.7
238,342 + +0.4
238,343 - +0.5
238,343 - +1.8
238,370 - -0.0
238,380 + -0.6
238,380 + +1.2
238,380 + +1.0
238,380 + +0.8
238,381 - -0.1
238,381 - -1.8
238,590 + GFF2449 0.11 +1.1
238,590 + GFF2449 0.11 +0.1
238,656 + GFF2449 0.15 +1.0
238,656 + GFF2449 0.15 +1.0
238,656 + GFF2449 0.15 +0.5
238,656 + GFF2449 0.15 +0.8
238,657 - GFF2449 0.15 +0.7
238,657 - GFF2449 0.15 +0.6
238,657 - GFF2449 0.15 +0.1
238,657 - GFF2449 0.15 +0.6
238,657 - GFF2449 0.15 +1.5
238,657 - GFF2449 0.15 +2.3
238,657 - GFF2449 0.15 +0.7
238,663 + GFF2449 0.15 +0.2
238,663 + GFF2449 0.15 +1.2
238,663 + GFF2449 0.15 +1.3
238,663 + GFF2449 0.15 +0.2
238,663 + GFF2449 0.15 +1.2
238,663 + GFF2449 0.15 +1.6
238,663 + GFF2449 0.15 +0.5
238,663 + GFF2449 0.15 +0.7
238,663 + GFF2449 0.15 +0.4
238,663 + GFF2449 0.15 +0.7
238,664 - GFF2449 0.16 +0.6
238,664 - GFF2449 0.16 +0.7
238,664 - GFF2449 0.16 +0.8
238,664 - GFF2449 0.16 +1.0
238,664 - GFF2449 0.16 +1.0
238,664 - GFF2449 0.16 -0.4
238,664 - GFF2449 0.16 +0.5
239,204 - GFF2449 0.46 +0.5
239,830 - GFF2449 0.81 +1.6
239,891 - GFF2449 0.84 -0.6
240,078 + +1.4
240,079 - +0.7
240,112 + -0.6
240,113 - -1.1
240,113 - +1.3
240,412 + GFF2450 0.24 +1.3
240,412 + GFF2450 0.24 +0.9
240,553 + GFF2450 0.38 +1.0
240,589 + GFF2450 0.41 +0.8
240,589 + GFF2450 0.41 +0.5
240,590 - GFF2450 0.42 +0.3
240,636 + GFF2450 0.46 +1.3
240,636 + GFF2450 0.46 +1.4
240,637 - GFF2450 0.46 +1.3
240,637 - GFF2450 0.46 +0.5
241,129 - -0.2

Or see this region's nucleotide sequence