Strain Fitness in Pseudomonas sp. DMC3 around GFF2445

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2443 and GFF2444 are separated by 11 nucleotidesGFF2444 and GFF2445 are separated by 172 nucleotidesGFF2445 and GFF2446 are separated by 110 nucleotides GFF2443 - Flagellar secretion chaperone FliS, at 232,849 to 233,247 GFF2443 GFF2444 - hypothetical protein, at 233,259 to 233,555 GFF2444 GFF2445 - Anaerobic nitric oxide reductase transcription regulator NorR, at 233,728 to 235,203 GFF2445 GFF2446 - Signal transduction histidine-protein kinase AtoS, at 235,314 to 236,525 GFF2446 Position (kb) 233 234 235 236Strain fitness (log2 ratio) -2 -1 0 1 2at 232.809 kb on + strandat 232.820 kb on + strandat 232.820 kb on + strandat 232.821 kb on - strandat 232.821 kb on - strandat 232.844 kb on - strandat 232.844 kb on - strandat 233.110 kb on + strand, within GFF2443at 233.110 kb on + strand, within GFF2443at 233.110 kb on + strand, within GFF2443at 233.110 kb on + strand, within GFF2443at 233.110 kb on + strand, within GFF2443at 233.111 kb on - strand, within GFF2443at 233.111 kb on - strand, within GFF2443at 233.111 kb on - strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.116 kb on + strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.117 kb on - strand, within GFF2443at 233.198 kb on + strand, within GFF2443at 233.269 kb on + strandat 233.269 kb on + strandat 233.269 kb on + strandat 233.270 kb on - strandat 233.270 kb on - strandat 233.270 kb on - strandat 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.437 kb on + strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.438 kb on - strand, within GFF2444at 233.445 kb on + strand, within GFF2444at 233.538 kb on + strandat 233.568 kb on + strandat 233.618 kb on - strandat 233.622 kb on - strandat 233.622 kb on - strandat 233.629 kb on - strandat 233.629 kb on - strandat 233.629 kb on - strandat 233.631 kb on + strandat 233.632 kb on - strandat 233.688 kb on - strandat 233.722 kb on + strandat 233.722 kb on + strandat 233.722 kb on + strandat 233.723 kb on - strandat 233.723 kb on - strandat 233.723 kb on - strandat 233.871 kb on + strandat 233.891 kb on + strand, within GFF2445at 233.892 kb on - strand, within GFF2445at 233.892 kb on - strand, within GFF2445at 233.936 kb on + strand, within GFF2445at 233.989 kb on - strand, within GFF2445at 234.097 kb on + strand, within GFF2445at 234.097 kb on + strand, within GFF2445at 234.098 kb on - strand, within GFF2445at 234.098 kb on - strand, within GFF2445at 234.098 kb on - strand, within GFF2445at 234.109 kb on + strand, within GFF2445at 234.109 kb on + strand, within GFF2445at 234.109 kb on + strand, within GFF2445at 234.236 kb on + strand, within GFF2445at 234.236 kb on + strand, within GFF2445at 234.237 kb on - strand, within GFF2445at 234.237 kb on - strand, within GFF2445at 234.292 kb on + strand, within GFF2445at 234.292 kb on + strand, within GFF2445at 234.293 kb on - strand, within GFF2445at 234.293 kb on - strand, within GFF2445at 234.293 kb on - strand, within GFF2445at 234.475 kb on - strand, within GFF2445at 234.510 kb on - strand, within GFF2445at 234.637 kb on + strand, within GFF2445at 234.637 kb on + strand, within GFF2445at 234.637 kb on + strand, within GFF2445at 234.637 kb on + strand, within GFF2445at 234.637 kb on + strand, within GFF2445at 234.637 kb on + strand, within GFF2445at 234.637 kb on + strand, within GFF2445at 234.637 kb on + strand, within GFF2445at 234.637 kb on + strand, within GFF2445at 234.638 kb on - strand, within GFF2445at 234.638 kb on - strand, within GFF2445at 234.638 kb on - strand, within GFF2445at 234.638 kb on - strand, within GFF2445at 234.638 kb on - strand, within GFF2445at 234.640 kb on + strand, within GFF2445at 234.860 kb on - strand, within GFF2445at 234.860 kb on - strand, within GFF2445at 234.978 kb on + strand, within GFF2445at 234.979 kb on - strand, within GFF2445at 235.036 kb on + strand, within GFF2445at 235.036 kb on + strand, within GFF2445at 235.037 kb on - strand, within GFF2445at 235.159 kb on + strandat 235.159 kb on + strandat 235.159 kb on + strandat 235.228 kb on + strandat 235.260 kb on + strandat 235.261 kb on - strandat 235.263 kb on - strandat 235.349 kb on + strandat 235.372 kb on + strandat 235.372 kb on + strandat 235.449 kb on + strand, within GFF2446at 235.450 kb on - strand, within GFF2446at 235.450 kb on - strand, within GFF2446at 235.450 kb on - strand, within GFF2446at 235.933 kb on - strand, within GFF2446

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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232,809 + +1.2
232,820 + +0.1
232,820 + -0.6
232,821 - -0.4
232,821 - -0.0
232,844 - +0.7
232,844 - -0.6
233,110 + GFF2443 0.65 -1.4
233,110 + GFF2443 0.65 +0.2
233,110 + GFF2443 0.65 -0.9
233,110 + GFF2443 0.65 +0.2
233,110 + GFF2443 0.65 +0.5
233,111 - GFF2443 0.66 -0.1
233,111 - GFF2443 0.66 -0.2
233,111 - GFF2443 0.66 +1.4
233,116 + GFF2443 0.67 +1.4
233,116 + GFF2443 0.67 -0.7
233,116 + GFF2443 0.67 +0.6
233,116 + GFF2443 0.67 +0.3
233,116 + GFF2443 0.67 -1.2
233,116 + GFF2443 0.67 -0.9
233,116 + GFF2443 0.67 +0.1
233,116 + GFF2443 0.67 +0.9
233,116 + GFF2443 0.67 +1.0
233,116 + GFF2443 0.67 -1.9
233,116 + GFF2443 0.67 +0.2
233,116 + GFF2443 0.67 +0.8
233,117 - GFF2443 0.67 +0.7
233,117 - GFF2443 0.67 +0.9
233,117 - GFF2443 0.67 +0.2
233,117 - GFF2443 0.67 +1.0
233,117 - GFF2443 0.67 +0.4
233,117 - GFF2443 0.67 +0.1
233,117 - GFF2443 0.67 +0.5
233,117 - GFF2443 0.67 -0.1
233,198 + GFF2443 0.87 +0.4
233,269 + +0.3
233,269 + -2.1
233,269 + +1.1
233,270 - -0.9
233,270 - +0.4
233,270 - +1.0
233,437 + GFF2444 0.60 -1.3
233,437 + GFF2444 0.60 -0.5
233,437 + GFF2444 0.60 +0.6
233,437 + GFF2444 0.60 +1.1
233,437 + GFF2444 0.60 -0.4
233,437 + GFF2444 0.60 +0.3
233,437 + GFF2444 0.60 -0.5
233,437 + GFF2444 0.60 -1.1
233,437 + GFF2444 0.60 -1.0
233,437 + GFF2444 0.60 +0.6
233,438 - GFF2444 0.60 +0.7
233,438 - GFF2444 0.60 -0.4
233,438 - GFF2444 0.60 +0.6
233,438 - GFF2444 0.60 +1.7
233,438 - GFF2444 0.60 -0.6
233,438 - GFF2444 0.60 -0.0
233,438 - GFF2444 0.60 -0.9
233,438 - GFF2444 0.60 +0.2
233,438 - GFF2444 0.60 +1.6
233,438 - GFF2444 0.60 -0.2
233,445 + GFF2444 0.63 -0.9
233,538 + +1.4
233,568 + -0.4
233,618 - +0.7
233,622 - +0.6
233,622 - +0.3
233,629 - +0.3
233,629 - +0.9
233,629 - +0.7
233,631 + +1.2
233,632 - +0.5
233,688 - +0.9
233,722 + +0.3
233,722 + -0.0
233,722 + +0.4
233,723 - +1.1
233,723 - +1.1
233,723 - +0.7
233,871 + +0.3
233,891 + GFF2445 0.11 -0.5
233,892 - GFF2445 0.11 -0.7
233,892 - GFF2445 0.11 +1.4
233,936 + GFF2445 0.14 +0.6
233,989 - GFF2445 0.18 -0.1
234,097 + GFF2445 0.25 +0.9
234,097 + GFF2445 0.25 +0.1
234,098 - GFF2445 0.25 -0.1
234,098 - GFF2445 0.25 +0.2
234,098 - GFF2445 0.25 +1.3
234,109 + GFF2445 0.26 -0.2
234,109 + GFF2445 0.26 +0.4
234,109 + GFF2445 0.26 +0.4
234,236 + GFF2445 0.34 +1.1
234,236 + GFF2445 0.34 +0.9
234,237 - GFF2445 0.34 -0.0
234,237 - GFF2445 0.34 +0.0
234,292 + GFF2445 0.38 -0.5
234,292 + GFF2445 0.38 +0.9
234,293 - GFF2445 0.38 +0.9
234,293 - GFF2445 0.38 -0.7
234,293 - GFF2445 0.38 +0.5
234,475 - GFF2445 0.51 +0.7
234,510 - GFF2445 0.53 +0.7
234,637 + GFF2445 0.62 +0.9
234,637 + GFF2445 0.62 +1.9
234,637 + GFF2445 0.62 +0.4
234,637 + GFF2445 0.62 -0.0
234,637 + GFF2445 0.62 +0.2
234,637 + GFF2445 0.62 +0.6
234,637 + GFF2445 0.62 +0.9
234,637 + GFF2445 0.62 +1.0
234,637 + GFF2445 0.62 +0.7
234,638 - GFF2445 0.62 +0.0
234,638 - GFF2445 0.62 +0.4
234,638 - GFF2445 0.62 +0.4
234,638 - GFF2445 0.62 +1.7
234,638 - GFF2445 0.62 +1.4
234,640 + GFF2445 0.62 +0.6
234,860 - GFF2445 0.77 +0.1
234,860 - GFF2445 0.77 +0.8
234,978 + GFF2445 0.85 +1.1
234,979 - GFF2445 0.85 +0.8
235,036 + GFF2445 0.89 +1.0
235,036 + GFF2445 0.89 +0.9
235,037 - GFF2445 0.89 -0.4
235,159 + +0.6
235,159 + +1.9
235,159 + +0.3
235,228 + -1.6
235,260 + -1.9
235,261 - -1.8
235,263 - +0.5
235,349 + +0.0
235,372 + +1.1
235,372 + +0.7
235,449 + GFF2446 0.11 +0.4
235,450 - GFF2446 0.11 +0.3
235,450 - GFF2446 0.11 -0.3
235,450 - GFF2446 0.11 -0.9
235,933 - GFF2446 0.51 +0.5

Or see this region's nucleotide sequence