Strain Fitness in Pseudomonas sp. DMC3 around GFF2441

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2440 and GFF2441 are separated by 73 nucleotidesGFF2441 and GFF2442 are separated by 82 nucleotides GFF2440 - Flagellin, at 229,892 to 230,752 GFF2440 GFF2441 - hypothetical protein, at 230,826 to 231,182 GFF2441 GFF2442 - B-type flagellar hook-associated protein 2, at 231,265 to 232,719 GFF2442 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1 2at 229.829 kb on + strandat 229.899 kb on + strandat 229.900 kb on - strandat 229.905 kb on + strandat 229.905 kb on + strandat 230.050 kb on + strand, within GFF2440at 230.050 kb on + strand, within GFF2440at 230.050 kb on + strand, within GFF2440at 230.050 kb on + strand, within GFF2440at 230.050 kb on + strand, within GFF2440at 230.051 kb on - strand, within GFF2440at 230.051 kb on - strand, within GFF2440at 230.051 kb on - strand, within GFF2440at 230.051 kb on - strand, within GFF2440at 230.051 kb on - strand, within GFF2440at 230.051 kb on - strand, within GFF2440at 230.051 kb on - strand, within GFF2440at 230.104 kb on + strand, within GFF2440at 230.104 kb on + strand, within GFF2440at 230.104 kb on + strand, within GFF2440at 230.104 kb on + strand, within GFF2440at 230.105 kb on - strand, within GFF2440at 230.105 kb on - strand, within GFF2440at 230.105 kb on - strand, within GFF2440at 230.164 kb on + strand, within GFF2440at 230.182 kb on + strand, within GFF2440at 230.278 kb on + strand, within GFF2440at 230.278 kb on + strand, within GFF2440at 230.279 kb on - strand, within GFF2440at 230.279 kb on - strand, within GFF2440at 230.320 kb on + strand, within GFF2440at 230.321 kb on - strand, within GFF2440at 230.321 kb on - strand, within GFF2440at 230.376 kb on + strand, within GFF2440at 230.377 kb on - strand, within GFF2440at 230.412 kb on + strand, within GFF2440at 230.412 kb on + strand, within GFF2440at 230.413 kb on - strand, within GFF2440at 230.413 kb on - strand, within GFF2440at 230.422 kb on + strand, within GFF2440at 230.422 kb on + strand, within GFF2440at 230.422 kb on + strand, within GFF2440at 230.427 kb on + strand, within GFF2440at 230.427 kb on + strand, within GFF2440at 230.427 kb on + strand, within GFF2440at 230.427 kb on + strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.440 kb on + strand, within GFF2440at 230.440 kb on + strand, within GFF2440at 230.625 kb on + strand, within GFF2440at 230.626 kb on - strand, within GFF2440at 230.701 kb on - strandat 230.733 kb on + strandat 230.750 kb on + strandat 230.751 kb on - strandat 230.761 kb on + strandat 230.762 kb on - strandat 230.768 kb on - strandat 230.768 kb on - strandat 230.811 kb on + strandat 230.839 kb on + strandat 230.839 kb on + strandat 230.846 kb on + strandat 230.847 kb on - strandat 230.847 kb on - strandat 230.847 kb on - strandat 230.910 kb on - strand, within GFF2441at 230.910 kb on - strand, within GFF2441at 230.992 kb on + strand, within GFF2441at 230.992 kb on + strand, within GFF2441at 230.993 kb on - strand, within GFF2441at 230.993 kb on - strand, within GFF2441at 231.020 kb on + strand, within GFF2441at 231.020 kb on + strand, within GFF2441at 231.021 kb on - strand, within GFF2441at 231.021 kb on - strand, within GFF2441at 231.021 kb on - strand, within GFF2441at 231.125 kb on + strand, within GFF2441at 231.125 kb on + strand, within GFF2441at 231.126 kb on - strand, within GFF2441at 231.183 kb on + strandat 231.196 kb on + strandat 231.197 kb on - strandat 231.224 kb on + strandat 231.281 kb on + strandat 231.375 kb on + strandat 231.381 kb on + strandat 231.382 kb on - strandat 231.382 kb on - strandat 231.382 kb on - strandat 231.382 kb on - strandat 231.382 kb on - strandat 231.565 kb on + strand, within GFF2442at 231.565 kb on + strand, within GFF2442at 231.565 kb on + strand, within GFF2442at 231.566 kb on - strand, within GFF2442at 231.566 kb on - strand, within GFF2442at 231.566 kb on - strand, within GFF2442at 231.566 kb on - strand, within GFF2442at 231.685 kb on + strand, within GFF2442at 231.685 kb on + strand, within GFF2442at 231.685 kb on + strand, within GFF2442at 231.685 kb on + strand, within GFF2442at 231.685 kb on + strand, within GFF2442at 231.686 kb on - strand, within GFF2442at 231.686 kb on - strand, within GFF2442at 231.858 kb on + strand, within GFF2442at 231.882 kb on + strand, within GFF2442at 232.086 kb on + strand, within GFF2442at 232.086 kb on + strand, within GFF2442at 232.087 kb on - strand, within GFF2442at 232.129 kb on + strand, within GFF2442at 232.129 kb on + strand, within GFF2442at 232.130 kb on - strand, within GFF2442at 232.130 kb on - strand, within GFF2442at 232.130 kb on - strand, within GFF2442at 232.130 kb on - strand, within GFF2442at 232.130 kb on - strand, within GFF2442at 232.130 kb on - strand, within GFF2442at 232.130 kb on - strand, within GFF2442at 232.146 kb on + strand, within GFF2442at 232.146 kb on + strand, within GFF2442

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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229,829 + +1.1
229,899 + +0.8
229,900 - +0.7
229,905 + +1.2
229,905 + +1.0
230,050 + GFF2440 0.18 -0.3
230,050 + GFF2440 0.18 -0.8
230,050 + GFF2440 0.18 +0.2
230,050 + GFF2440 0.18 +2.1
230,050 + GFF2440 0.18 +0.5
230,051 - GFF2440 0.18 +1.0
230,051 - GFF2440 0.18 -0.9
230,051 - GFF2440 0.18 +0.9
230,051 - GFF2440 0.18 -0.2
230,051 - GFF2440 0.18 -0.4
230,051 - GFF2440 0.18 +0.1
230,051 - GFF2440 0.18 +1.0
230,104 + GFF2440 0.25 +0.7
230,104 + GFF2440 0.25 +0.6
230,104 + GFF2440 0.25 -1.3
230,104 + GFF2440 0.25 +0.4
230,105 - GFF2440 0.25 +0.8
230,105 - GFF2440 0.25 +1.2
230,105 - GFF2440 0.25 +1.0
230,164 + GFF2440 0.32 +0.8
230,182 + GFF2440 0.34 +2.2
230,278 + GFF2440 0.45 +0.2
230,278 + GFF2440 0.45 +0.4
230,279 - GFF2440 0.45 +0.2
230,279 - GFF2440 0.45 +0.4
230,320 + GFF2440 0.50 +0.1
230,321 - GFF2440 0.50 +0.3
230,321 - GFF2440 0.50 -0.5
230,376 + GFF2440 0.56 -0.4
230,377 - GFF2440 0.56 +1.1
230,412 + GFF2440 0.60 +1.1
230,412 + GFF2440 0.60 +0.6
230,413 - GFF2440 0.61 +0.6
230,413 - GFF2440 0.61 +0.4
230,422 + GFF2440 0.62 -0.1
230,422 + GFF2440 0.62 -0.9
230,422 + GFF2440 0.62 +1.1
230,427 + GFF2440 0.62 +1.0
230,427 + GFF2440 0.62 +0.3
230,427 + GFF2440 0.62 -0.5
230,427 + GFF2440 0.62 +0.1
230,428 - GFF2440 0.62 +0.8
230,428 - GFF2440 0.62 +0.4
230,428 - GFF2440 0.62 +1.1
230,428 - GFF2440 0.62 +1.1
230,428 - GFF2440 0.62 +1.6
230,440 + GFF2440 0.64 +1.0
230,440 + GFF2440 0.64 +1.2
230,625 + GFF2440 0.85 +0.9
230,626 - GFF2440 0.85 +0.8
230,701 - +0.4
230,733 + -0.2
230,750 + -1.4
230,751 - +0.2
230,761 + +0.1
230,762 - +1.0
230,768 - -0.7
230,768 - +0.7
230,811 + -0.8
230,839 + +0.9
230,839 + +0.4
230,846 + -1.2
230,847 - +0.3
230,847 - +0.4
230,847 - -0.7
230,910 - GFF2441 0.24 +0.3
230,910 - GFF2441 0.24 -0.7
230,992 + GFF2441 0.46 -0.2
230,992 + GFF2441 0.46 +1.0
230,993 - GFF2441 0.47 -1.4
230,993 - GFF2441 0.47 -0.9
231,020 + GFF2441 0.54 -1.3
231,020 + GFF2441 0.54 -0.2
231,021 - GFF2441 0.55 -0.6
231,021 - GFF2441 0.55 -0.9
231,021 - GFF2441 0.55 -0.5
231,125 + GFF2441 0.84 -1.2
231,125 + GFF2441 0.84 -0.2
231,126 - GFF2441 0.84 -0.6
231,183 + -0.9
231,196 + -0.3
231,197 - -0.9
231,224 + -0.7
231,281 + -1.9
231,375 + +0.0
231,381 + +0.3
231,382 - +0.8
231,382 - -0.0
231,382 - +1.2
231,382 - +0.3
231,382 - +1.4
231,565 + GFF2442 0.21 +0.2
231,565 + GFF2442 0.21 +0.4
231,565 + GFF2442 0.21 +0.7
231,566 - GFF2442 0.21 +0.7
231,566 - GFF2442 0.21 +0.4
231,566 - GFF2442 0.21 +1.7
231,566 - GFF2442 0.21 -0.2
231,685 + GFF2442 0.29 +0.1
231,685 + GFF2442 0.29 +0.3
231,685 + GFF2442 0.29 -0.6
231,685 + GFF2442 0.29 +0.6
231,685 + GFF2442 0.29 +0.6
231,686 - GFF2442 0.29 +0.6
231,686 - GFF2442 0.29 +0.4
231,858 + GFF2442 0.41 -1.2
231,882 + GFF2442 0.42 -0.3
232,086 + GFF2442 0.56 +1.5
232,086 + GFF2442 0.56 +0.7
232,087 - GFF2442 0.56 -0.9
232,129 + GFF2442 0.59 +0.2
232,129 + GFF2442 0.59 +0.7
232,130 - GFF2442 0.59 -0.2
232,130 - GFF2442 0.59 -0.2
232,130 - GFF2442 0.59 +0.2
232,130 - GFF2442 0.59 +1.3
232,130 - GFF2442 0.59 +0.8
232,130 - GFF2442 0.59 +1.1
232,130 - GFF2442 0.59 +0.6
232,146 + GFF2442 0.61 +0.9
232,146 + GFF2442 0.61 +0.9

Or see this region's nucleotide sequence