Strain Fitness in Pseudomonas sp. DMC3 around GFF2430

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2429 and GFF2430 are separated by 17 nucleotidesGFF2430 and GFF2431 are separated by 55 nucleotides GFF2429 - hypothetical protein, at 216,623 to 217,693 GFF2429 GFF2430 - Rhamnosyl O-methyltransferase, at 217,711 to 218,448 GFF2430 GFF2431 - hypothetical protein, at 218,504 to 221,416 GFF2431 Position (kb) 217 218 219Strain fitness (log2 ratio) -1 0 1 2at 216.789 kb on - strand, within GFF2429at 216.789 kb on - strand, within GFF2429at 216.789 kb on - strand, within GFF2429at 216.800 kb on + strand, within GFF2429at 216.974 kb on + strand, within GFF2429at 216.974 kb on + strand, within GFF2429at 216.975 kb on - strand, within GFF2429at 216.975 kb on - strand, within GFF2429at 217.130 kb on + strand, within GFF2429at 217.130 kb on + strand, within GFF2429at 217.130 kb on + strand, within GFF2429at 217.130 kb on + strand, within GFF2429at 217.190 kb on + strand, within GFF2429at 217.191 kb on - strand, within GFF2429at 217.277 kb on + strand, within GFF2429at 217.277 kb on + strand, within GFF2429at 217.277 kb on + strand, within GFF2429at 217.278 kb on - strand, within GFF2429at 217.278 kb on - strand, within GFF2429at 217.278 kb on - strand, within GFF2429at 217.283 kb on + strand, within GFF2429at 217.283 kb on + strand, within GFF2429at 217.283 kb on + strand, within GFF2429at 217.284 kb on - strand, within GFF2429at 217.284 kb on - strand, within GFF2429at 217.451 kb on + strand, within GFF2429at 217.451 kb on + strand, within GFF2429at 217.452 kb on - strand, within GFF2429at 217.461 kb on - strand, within GFF2429at 217.461 kb on - strand, within GFF2429at 217.461 kb on - strand, within GFF2429at 217.655 kb on + strandat 217.655 kb on + strandat 217.655 kb on + strandat 217.662 kb on - strandat 217.837 kb on + strand, within GFF2430at 217.837 kb on + strand, within GFF2430at 217.838 kb on - strand, within GFF2430at 217.838 kb on - strand, within GFF2430at 217.838 kb on - strand, within GFF2430at 217.838 kb on - strand, within GFF2430at 217.843 kb on + strand, within GFF2430at 217.844 kb on - strand, within GFF2430at 217.844 kb on - strand, within GFF2430at 217.976 kb on - strand, within GFF2430at 217.976 kb on - strand, within GFF2430at 217.976 kb on - strand, within GFF2430at 217.976 kb on - strand, within GFF2430at 217.978 kb on + strand, within GFF2430at 217.978 kb on + strand, within GFF2430at 217.978 kb on + strand, within GFF2430at 217.979 kb on - strand, within GFF2430at 217.979 kb on - strand, within GFF2430at 218.221 kb on + strand, within GFF2430at 218.248 kb on + strand, within GFF2430at 218.248 kb on + strand, within GFF2430at 218.249 kb on - strand, within GFF2430at 218.249 kb on - strand, within GFF2430at 218.249 kb on - strand, within GFF2430at 218.249 kb on - strand, within GFF2430at 218.249 kb on - strand, within GFF2430at 218.446 kb on + strandat 218.504 kb on - strandat 218.516 kb on + strandat 218.517 kb on - strandat 218.517 kb on - strandat 218.517 kb on - strandat 218.541 kb on + strandat 218.542 kb on - strandat 218.542 kb on - strandat 218.610 kb on - strandat 218.610 kb on - strandat 218.610 kb on - strandat 218.610 kb on - strandat 218.612 kb on + strandat 218.612 kb on + strandat 218.691 kb on - strandat 218.741 kb on + strandat 218.741 kb on + strandat 218.741 kb on + strandat 218.742 kb on - strandat 218.769 kb on - strandat 218.769 kb on - strandat 218.769 kb on - strandat 218.882 kb on + strand, within GFF2431at 218.882 kb on + strand, within GFF2431at 218.883 kb on - strand, within GFF2431at 218.883 kb on - strand, within GFF2431at 218.883 kb on - strand, within GFF2431at 218.909 kb on + strand, within GFF2431at 218.910 kb on - strand, within GFF2431at 218.942 kb on + strand, within GFF2431at 218.942 kb on + strand, within GFF2431at 218.942 kb on + strand, within GFF2431at 218.943 kb on - strand, within GFF2431at 218.978 kb on + strand, within GFF2431at 218.978 kb on + strand, within GFF2431at 218.978 kb on + strand, within GFF2431at 218.979 kb on - strand, within GFF2431at 218.990 kb on + strand, within GFF2431at 218.990 kb on + strand, within GFF2431at 219.005 kb on + strand, within GFF2431at 219.019 kb on + strand, within GFF2431at 219.095 kb on + strand, within GFF2431at 219.095 kb on + strand, within GFF2431at 219.140 kb on + strand, within GFF2431at 219.140 kb on + strand, within GFF2431at 219.141 kb on - strand, within GFF2431at 219.141 kb on - strand, within GFF2431at 219.141 kb on - strand, within GFF2431at 219.141 kb on - strand, within GFF2431at 219.161 kb on + strand, within GFF2431at 219.161 kb on + strand, within GFF2431at 219.161 kb on + strand, within GFF2431at 219.161 kb on + strand, within GFF2431at 219.161 kb on + strand, within GFF2431at 219.162 kb on - strand, within GFF2431at 219.162 kb on - strand, within GFF2431at 219.162 kb on - strand, within GFF2431at 219.162 kb on - strand, within GFF2431at 219.162 kb on - strand, within GFF2431at 219.192 kb on - strand, within GFF2431at 219.192 kb on - strand, within GFF2431at 219.192 kb on - strand, within GFF2431at 219.206 kb on + strand, within GFF2431at 219.207 kb on - strand, within GFF2431at 219.207 kb on - strand, within GFF2431at 219.207 kb on - strand, within GFF2431at 219.440 kb on + strand, within GFF2431at 219.440 kb on + strand, within GFF2431at 219.441 kb on - strand, within GFF2431

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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216,789 - GFF2429 0.15 +2.0
216,789 - GFF2429 0.15 +0.4
216,789 - GFF2429 0.15 +0.4
216,800 + GFF2429 0.17 -0.2
216,974 + GFF2429 0.33 +0.1
216,974 + GFF2429 0.33 +2.2
216,975 - GFF2429 0.33 +0.7
216,975 - GFF2429 0.33 +0.9
217,130 + GFF2429 0.47 +1.2
217,130 + GFF2429 0.47 -0.2
217,130 + GFF2429 0.47 -0.1
217,130 + GFF2429 0.47 +0.5
217,190 + GFF2429 0.53 +1.6
217,191 - GFF2429 0.53 +0.4
217,277 + GFF2429 0.61 +2.2
217,277 + GFF2429 0.61 -0.9
217,277 + GFF2429 0.61 +0.2
217,278 - GFF2429 0.61 -1.6
217,278 - GFF2429 0.61 +0.5
217,278 - GFF2429 0.61 +0.3
217,283 + GFF2429 0.62 +0.5
217,283 + GFF2429 0.62 -0.8
217,283 + GFF2429 0.62 -0.1
217,284 - GFF2429 0.62 -0.5
217,284 - GFF2429 0.62 +1.7
217,451 + GFF2429 0.77 +0.7
217,451 + GFF2429 0.77 -0.1
217,452 - GFF2429 0.77 +0.3
217,461 - GFF2429 0.78 -0.1
217,461 - GFF2429 0.78 -0.2
217,461 - GFF2429 0.78 +0.6
217,655 + -0.5
217,655 + +0.6
217,655 + -0.7
217,662 - +0.3
217,837 + GFF2430 0.17 -0.4
217,837 + GFF2430 0.17 +1.1
217,838 - GFF2430 0.17 +0.3
217,838 - GFF2430 0.17 +0.6
217,838 - GFF2430 0.17 +0.1
217,838 - GFF2430 0.17 -0.6
217,843 + GFF2430 0.18 -0.0
217,844 - GFF2430 0.18 -1.6
217,844 - GFF2430 0.18 +0.7
217,976 - GFF2430 0.36 +1.0
217,976 - GFF2430 0.36 +0.7
217,976 - GFF2430 0.36 -0.1
217,976 - GFF2430 0.36 -0.0
217,978 + GFF2430 0.36 +0.3
217,978 + GFF2430 0.36 +0.5
217,978 + GFF2430 0.36 +0.4
217,979 - GFF2430 0.36 +1.0
217,979 - GFF2430 0.36 +1.4
218,221 + GFF2430 0.69 +0.3
218,248 + GFF2430 0.73 -0.1
218,248 + GFF2430 0.73 +0.4
218,249 - GFF2430 0.73 -1.3
218,249 - GFF2430 0.73 +0.7
218,249 - GFF2430 0.73 +0.6
218,249 - GFF2430 0.73 +0.1
218,249 - GFF2430 0.73 +1.0
218,446 + -0.3
218,504 - +0.1
218,516 + +1.9
218,517 - +2.1
218,517 - +0.9
218,517 - -0.1
218,541 + -0.4
218,542 - +1.2
218,542 - +0.9
218,610 - +0.8
218,610 - +0.2
218,610 - +1.1
218,610 - +0.0
218,612 + +0.4
218,612 + +0.9
218,691 - -1.6
218,741 + -0.2
218,741 + +1.5
218,741 + +1.5
218,742 - +0.7
218,769 - +1.1
218,769 - +0.6
218,769 - -0.1
218,882 + GFF2431 0.13 +0.7
218,882 + GFF2431 0.13 +1.0
218,883 - GFF2431 0.13 -0.4
218,883 - GFF2431 0.13 +1.1
218,883 - GFF2431 0.13 +0.4
218,909 + GFF2431 0.14 -0.4
218,910 - GFF2431 0.14 +0.2
218,942 + GFF2431 0.15 +0.7
218,942 + GFF2431 0.15 +1.7
218,942 + GFF2431 0.15 -1.2
218,943 - GFF2431 0.15 +0.2
218,978 + GFF2431 0.16 +0.4
218,978 + GFF2431 0.16 +1.2
218,978 + GFF2431 0.16 +0.6
218,979 - GFF2431 0.16 -0.6
218,990 + GFF2431 0.17 -0.2
218,990 + GFF2431 0.17 +0.4
219,005 + GFF2431 0.17 -0.9
219,019 + GFF2431 0.18 +1.2
219,095 + GFF2431 0.20 -0.1
219,095 + GFF2431 0.20 +0.6
219,140 + GFF2431 0.22 +1.4
219,140 + GFF2431 0.22 +1.4
219,141 - GFF2431 0.22 +0.2
219,141 - GFF2431 0.22 +0.9
219,141 - GFF2431 0.22 -0.4
219,141 - GFF2431 0.22 +1.6
219,161 + GFF2431 0.23 +1.1
219,161 + GFF2431 0.23 +1.4
219,161 + GFF2431 0.23 -0.0
219,161 + GFF2431 0.23 +1.3
219,161 + GFF2431 0.23 -0.7
219,162 - GFF2431 0.23 +0.0
219,162 - GFF2431 0.23 +0.7
219,162 - GFF2431 0.23 +1.1
219,162 - GFF2431 0.23 +0.7
219,162 - GFF2431 0.23 +0.7
219,192 - GFF2431 0.24 +0.2
219,192 - GFF2431 0.24 +0.0
219,192 - GFF2431 0.24 +0.8
219,206 + GFF2431 0.24 -0.1
219,207 - GFF2431 0.24 +1.0
219,207 - GFF2431 0.24 +0.1
219,207 - GFF2431 0.24 +0.8
219,440 + GFF2431 0.32 +0.3
219,440 + GFF2431 0.32 -0.2
219,441 - GFF2431 0.32 +0.2

Or see this region's nucleotide sequence